tef: Temporal eigenfunction ordination

In gavinsimpson/temporalEF: Temporal Eigenfunctions

Description

Fits an ordination using temporal eigenfunctions as constraints.

Usage

tef(x, ...)

## Default S3 method:
tef(x, index, method = c("ate", "aem", "pctn", "pcnm"),
  ordination = c("rda"), ...)

Arguments

x	community data matrix or data frame
...	additional arguments passed to other methods. Arguments are also passed to the function generating the temporal eigenfunctions and the constrained ordination function.
index	numeric; the time ordering of the samples from which temporal eigenfunctions will be computed
method	character; which method to use to create the temporal eigenfunctions
ordination	character; the name of the constrained ordination function, from the vegan package to use. Only rda is support currently.

Details

TODO

Value

An object of class "tef", a list with the following components:

ordination

the fitted constrained ordination.

tefs

the computed set of temporal eigenfunctions.

Author(s)

Gavin L. Simpson

gavinsimpson/temporalEF documentation built on May 16, 2019, 10:11 p.m.