generate_file_list: File list construction

In gbedwell/rigrag: Identification of Recurrently Targeted Genes and Recurrently Avoided Genes During HIV-1 Infection

Description

Generates a list of integration site files in a given directory for import into rigrag.

Usage

generate_file_list(directory, pattern)

Arguments

directory	The directory to search. Entered as a character string. Can be called with getwd() if the directory of interest is the current working directory. The function is written to search recursively, so all subdirectories within the named directory are searched.
pattern	The common file naming pattern to search for. Input as a character string. Typically something like "*genic.bed".

Examples

generate_file_list()

gbedwell/rigrag documentation built on June 23, 2021, 10:32 p.m.