pattern_frag_model: Model generation based on pattern fragmentation
In gbedwell/rigrag: Identification of Recurrently Targeted Genes and Recurrently Avoided Genes During HIV-1 Infection
Description
Usage
Arguments
Examples
View source: R/pattern_frag_model.R
Description
Calculates the expected integration frequency, the upper boundary, and the lower boundary for each sample.
Defines outliers based on the relation to the calculated upper and lower boundaries.
Usage
1
pattern_frag_model(df, pattern = c("NASB", "MB"))
Arguments
df
The dataframe generated with int_file_import
pattern
The character string defining the enzymes used to digest the genomic DNA. Currenty available patterns are "MB" for MseI/BglII digestion and "NASB" for NheI/AvrII/SpeI/BamHI digestion.
Examples
1
gbedwell/rigrag documentation built on June 23, 2021, 10:32 p.m.
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Description Usage Arguments Examples
View source: R/pattern_frag_model.R
Description
Calculates the expected integration frequency, the upper boundary, and the lower boundary for each sample. Defines outliers based on the relation to the calculated upper and lower boundaries.
Usage
1 | pattern_frag_model(df, pattern = c("NASB", "MB"))
|
Arguments
df |
The dataframe generated with |
pattern |
The character string defining the enzymes used to digest the genomic DNA. Currenty available patterns are |
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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