API for gbradburd/bedassle
Quantifies Effects of Geographic and Ecological Distance on Genetic Differentiation
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| announce.xval.procedure | Source code |
| bedassle | Man page |
| bedassle-package | Man page |
| calcPWP | Source code |
| check.any.dist | Source code |
| check.call | Source code |
| check.compare.mod.xvals.call | Source code |
| check.dist.args | Source code |
| check.envDist.arg | Source code |
| check.for.output.files | Source code |
| check.freqs | Source code |
| check.genDist.arg | Source code |
| check.geoDist.arg | Source code |
| check.misc.args | Source code |
| check.mod.cols.arg | Source code |
| check.mod.names.arg | Source code |
| check.mod.order.arg | Source code |
| check.parallel.args | Source code |
| check.partition | Source code |
| check.partitions.arg | Source code |
| check.partitions.file | Source code |
| check.pi | Source code |
| check.rep | Source code |
| check.results.args | Source code |
| check.xval.call | Source code |
| check.xval.dist.args | Source code |
| check.xval.files.arg | Source code |
| check.xval.misc.args | Source code |
| checkCov | Source code |
| compare.model.xvals | Man page Source code |
| describe.picked.model | Source code |
| end.parallelization | Source code |
| extract.aE | Source code |
| extract.x | Source code |
| fitToTest | Source code |
| freqs2pairwisePi | Man page Source code |
| get.MAP.par.cov | Source code |
| get.alpha0 | Source code |
| get.alpha2 | Source code |
| get.alphaD | Source code |
| get.alphaE | Source code |
| get.bedassle.chain.results | Source code |
| get.bedassle.result.names | Source code |
| get.bedassle.results | Source code |
| get.counted.allele | Source code |
| get.cov.function | Source code |
| get.freqs | Source code |
| get.freqs.onerowperind | Source code |
| get.freqs.tworowperind | Source code |
| get.nrow | Source code |
| get.nugget | Source code |
| get.par | Source code |
| get.par.cov | Source code |
| get.par.cov.CI | Source code |
| get.posterior | Source code |
| get.sample.names | Source code |
| get.sig.groups | Source code |
| getInits | Source code |
| head2headMod | Source code |
| is.whole.number | Source code |
| load.data.block | Source code |
| load.partitions.file | Source code |
| make.all.bedassle.plots | Man page Source code |
| make.data.block | Source code |
| make.data.block.S3 | Source code |
| make.envDist.array | Source code |
| make.envDist.list | Source code |
| makePartitions | Man page Source code |
| makePostParCov | Source code |
| makeXvalBlock | Source code |
| pairwise.mod.xval.ttest | Source code |
| parallel.prespecify.check | Source code |
| parallelizing | Source code |
| passDist | Source code |
| pick.stan.model | Source code |
| plot.alpha.param | Source code |
| plot.alpha.params | Source code |
| plot.alpha0 | Source code |
| plot.chain.model.fit.CIs | Source code |
| plot.lpd | Source code |
| plot.mod.xval.summary | Source code |
| plot.model.fit.CIs | Source code |
| plot.nuggets | Source code |
| post.process.par.cov | Source code |
| print.data.block | Source code |
| pwp2allelicCov | Man page Source code |
| read.xval.results | Source code |
| run.bedassle | Man page Source code |
| standardize.distances | Source code |
| standardize.envDist | Source code |
| standardize.xval.results | Source code |
| structure2bedassle | Man page Source code |
| summarize.mod.xval | Source code |
| ttest.all.mod.xvals | Source code |
| unstandardize.distances | Source code |
| validate.data.block | Source code |
| whichMod | Source code |
| wishLnL | Source code |
| write.bedassle.chain.results | Source code |
| write.bedassle.results | Source code |
| write.xvals | Source code |
| xValidation | Man page Source code |
| xvalBedassle | Source code |
