GetResidual: Calculate pearson residuals of features not in the scale.data

In gcday/seurat_fresh: Tools for Single Cell Genomics

Description

This function calls sctransform::get_residuals.

Usage

GetResidual(object, features, assay = "SCT", verbose = TRUE)

Arguments

object	A seurat object
features	Name of features to add into the scale.data
assay	Name of the assay of the seurat object generated by SCTransform
verbose	Whether to print messages and progress bars

Value

Returns a Seurat object containing pearson residuals of added features in its scale.data

See Also

get_residuals

Examples

pbmc_small <- SCTransform(object = pbmc_small, variable.features.n = 20)
pbmc_small <- GetResidual(object = pbmc_small, features = c('MS4A1', 'TCL1A'))

gcday/seurat_fresh documentation built on June 23, 2019, 12:02 a.m.