query_plots: List, extract map selected plots

In gdauby/bdd_plots_central_africa: Exploring and updating the Central Africa plot database

List, extract map selected plots

Description

Provide and map list of selected plots, including associated traits for individuals

Usage

query_plots(
  team_lead = NULL,
  plot_name = NULL,
  tag = NULL,
  country = NULL,
  province = NULL,
  locality_name = NULL,
  method = NULL,
  date_y = NULL,
  extract_individuals = FALSE,
  map = FALSE,
  zoom = 0,
  label = T,
  try_optimal_label = F,
  map_type = "mapview",
  id_individual = NULL,
  id_plot = NULL,
  id_tax = NULL,
  id_specimen = NULL,
  show_multiple_census = FALSE,
  show_all_coordinates = FALSE,
  remove_ids = TRUE,
  collapse_multiple_val = FALSE,
  extract_traits = TRUE,
  traits_to_genera = FALSE,
  wd_fam_level = FALSE,
  include_liana = FALSE,
  extract_subplot_features = TRUE
)

Arguments

team_lead	string fuzzy person name to look for
plot_name	string fuzzy plot name to look for
tag	numeric exact tag number of the plot
country	string fuzzy country name to look for
province	string fuzzy province name to look for
locality_name	string fuzzy locality_name name to look for
method	stringfuzzy method name to look for
date_y	integer year of collect
extract_individuals	logical whether individuals instead of plot list as output
map	logical whether map whould be produced
zoom	integer positive values indicating zoom level for ggplot style map
label	logical for ggplot map, whether adding label or not
try_optimal_label	logical if map is ggplot
map_type	string mapview or ggplot, mapview by default
id_individual	numeric id of individual to be extracted
id_plot	numeric id of plot to be extracted
id_specimen	numeric id of specimen linked to individuals
show_multiple_census	logical whether multiple census should be shown, by default FALSE
remove_ids	logical remove all ids columns, by default TRUE
collapse_multiple_val	logical whether multiple traits measures should be collapsed (resulting values as character, separated by dash)
extract_traits	whether species level traits should be extracted as well
traits_to_genera	if species-level traits should be extrapolated to genus level, by default is FALSE
wd_fam_level	logical, if wood density should be given at family level or not NOT YET FULLY AVAILABLE
include_liana	logical, if liana should be included, by default FALSE

Value

A tibble of all plots or individuals

A tibble of plots or individuals if extract_individuals is TRUE

Author(s)

Gilles Dauby, [e-mail]

gdauby/bdd_plots_central_africa documentation built on Aug. 1, 2024, 4:33 a.m.