Man pages for gdauby/bdd_plots_central_africa
Exploring and updating the Central Africa plot database
| add_entry_taxa | Add new entry to taxonomic table |
| add_growth_form_taxa | Add growth forms to a single taxa |
| add_individuals | Add new individuals data |
| add_method | Add a method in method list |
| add_plots | Add new plot metadata |
| add_specimens | Add new specimens data |
| add_sp_traits_measures | Add an observation in trait measurement table at species... |
| add_subplot_features | Add an observation in subplot_features table |
| add_subplottype | Add a type in subplot table |
| add_taxa_table_taxa | List, extract taxa |
| add_trait | Add a trait in trait list |
| add_traits_measures | Add an observation in trait measurement table |
| add_trait_taxa | Add a trait in species trait list |
| call.mydb | Load the database |
| call.mydb.taxa | Load the taxonomic database |
| choose_growth_form | Choose growth forms |
| country_list | List of countries |
| divid_plot | Divide 1 ha square plots into 25 squares subplots of 400m²... |
| dot-add_link_specimens | Add link between specimen and individual |
| dot-add_modif_field | Internal function |
| dot-comp_print_vec | Internal function |
| dot-delete_colnam | Delete an entry in colnam table |
| dot-delete_entry_sp_trait_measure | Delete an entry in traits measurements table |
| dot-delete_entry_trait_measure | Delete an entry in trait measurement table |
| dot-delete_individuals | Delete an entry in individuals table |
| dot-delete_link_individual_specimen | Delete an entry in trait measurement table |
| dot-delete_plot | Delete an entry in plot meta-data |
| dot-delete_specimens | Delete an entry in specimen table |
| dot-delete_subplotfeature | Delete an entry in subplotype_list table |
| dot-delete_subplottype | Delete an entry in subplotype_list table |
| dot-delete_taxa | Delete an entry in taxonomic table |
| dot-find_cat | Internal function |
| dot-find_ids | Internal function |
| dot-find_similar_string | Internal function |
| dot-get_trait_individuals_values | Internal function |
| dot-link_sp_trait | Internal function |
| dot-link_subplotype | Internal function |
| dot-link_table | Internal function |
| dot-link_trait | Internal function |
| dot-pairwise_string_similarity | Internal function |
| dot-query_unmatched_specimens | Internal function |
| dot-rename_data | Internal function |
| dot-split_censuses | Split plot data into census |
| dot-time_diff | Add time difference in number of days for two census |
| dot-trim.growth | Identify potential errors for estimating growth |
| explore_allometric_taxa | Explore allometric relation |
| func_try_fetch | Send query to postgresql database |
| get_ref_specimen_ind | Find unlinked individual |
| get_updates_diconame | Get backups of modified taxonomic data |
| growth_computing | Growth computing for multiple census |
| herbarium_label | Herbarium labels |
| launch_stand_tax_app | Launch shiny app for taxonomic standardization |
| match_tax | Query and standardize taxonomy |
| merge_individuals_taxa | Merge individuals and taxonomic backbone |
| method_list | List of method |
| phylo_tree | phylo_tree |
| pipe | Pipe operator |
| print_table | print table as html in viewer |
| process_trimble_data | Process trimble data |
| province_list | List of province |
| query_colnam | Query in colnam table |
| query_exact_match | Query exact match |
| query_fuzzy_match | Query fuzzy match |
| query_plots | List, extract map selected plots |
| query_specimens | Exploring specimens data |
| query_subplots | List, selected subplots |
| query_taxa | List, extract taxa |
| query_trait | Query in trait table |
| query_traits_measures | Query for traits |
| replace_NA | Internal function |
| species_plot_matrix | Get species-plot data frame |
| subplot_list | List of subplot features |
| table_taxa_tb | Table taxa |
| test.order.subplot | Check the order of subplots in a given data frame |
| traits_list | List of trait and features potentially liked to individual |
| traits_taxa_list | List of trait |
| try_open_postgres_table | Open postgresql database table |
| try_open_postgres_table_mem | Memoised try_open_postgres_table function |
| update_colnam | Update colnam |
| update_dico_name | Update taxonomic data |
| update_dico_name_batch | Update diconame data based on id of taxa |
| update_ident_specimens | Update specimens table |
| update_individuals | Update individuals data |
| update_plot_data | Update plot metadata |
| update_plot_data_batch | Update plot data data |
| update_specimens_batch | Update specimens data data |
| update_subplot_data_batch | Update subplot data data |
| update_subplots_table | Update subplot_table |
| update_subplottype_list_table | Update subplottype table |
| update_taxa_link_table | Update id table for taxa |
| update_trait_list_table | Update trait_list_table |
| update_traits_measures | Update traits_measurements table |
