Description Usage Arguments Value
This function conducts an association test using the formula provided by the
user (formula
) plus one column of @geno
, one column at a time.
The data from the association tests is obtained from a
genData
object.
1 2 
formula 
A formula (e.g. weight~sex+age) with the response on the
lefthand side and predictors (all the covariates except the markers) on
the righthand side. The variables included in the formula must be in the

data 
A 
method 
The regression method to be used. Currently, the following
methods are implemented: 
plot 
If TRUE a Manhattan plot is produced and filled with points as the association tests are run. 
verbose 
If TRUE more messages are printed. 
min.pValue 
Numeric, the minimum pvalue expected, used to determine the limits of the vertical axis of the Manhattan plot. 
chunkSize 
Represents the number of columns of 
Returns a matrix with estimates, SE, pvalue, etc.
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