Description Usage Arguments Value
This function conducts an association test using the formula provided by the
user (formula
) plus one column of @geno
, one column at a time.
The data from the association tests is obtained from a
genData
object.
1 2 |
formula |
A formula (e.g. weight~sex+age) with the response on the
left-hand side and predictors (all the covariates except the markers) on
the right-hand side. The variables included in the formula must be in the
|
data |
A |
method |
The regression method to be used. Currently, the following
methods are implemented: |
plot |
If TRUE a Manhattan plot is produced and filled with points as the association tests are run. |
verbose |
If TRUE more messages are printed. |
min.pValue |
Numeric, the minimum p-value expected, used to determine the limits of the vertical axis of the Manhattan plot. |
chunkSize |
Represents the number of columns of |
Returns a matrix with estimates, SE, p-value, etc.
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