olink_boxplot: Boxplot for Olink Data

In ge11232002/OlinkR: A toolkit for Olink data analysis

Description

Generate a list of boxplot of NPX vs. grouping variable.

Usage

olink_boxplot(se, features, x = NULL)

Arguments

se	a SummarizedExperiment.
features	character(n): the protein names to plot.
x	character(1): the grouping colname in colData(se).

Value

A list of ggplot objects

Author(s)

Ge Tan

Examples

npxFn <- system.file("extdata",
                     c("20200507_Inflammation_NPX_1.xlsx",
                       "20200625_Inflammation_NPX_2.xlsx"),
                     package = "OlinkR")
metaFn <- system.file("extdata", "Inflammation_Metadata.xlsx", package = "OlinkR")
se <- as_se(read_npx(npxFn, metaFn))
features <- c("IL8", "MCP-3")
pList <- olink_boxplot(se, features, x = "condition_Factor")

ge11232002/OlinkR documentation built on Jan. 17, 2022, 8:28 p.m.