Files in ge11232002/TKF
Pairwise Distance Estimation with TKF91 and TKF92 Model
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/MinSqTree.R
R/ScoringMatrix.R
R/TKF91.R
R/TKF92.R
R/TKF92HG.R
README.md
TKF.Rproj
configure
configure.ac
data/GONNET.rda
data/GONNETBF.rda
inst/TestData/p6.aa.fa
inst/TestData/pair1.fasta
inst/TestData/pair2.fasta
inst/TestData/testSeqs.fasta
inst/buildMatrix/buildGonnet.R
inst/extdata/daymatrix.txt
inst/extdata/pair.fasta
inst/extdata/pair1.fasta
inst/extdata/r2.distanceMatrix
inst/extdata/r2.varianceMatrix
inst/extdata/testSeqs.fasta
inst/extdata/testSet.fasta
inst/makePackage/TKF.txt
inst/oldScripts/TKF.r
inst/oldScripts/dynprog_TKF91.c
inst/oldScripts/dynprog_TKF92.c
man/AAToInt.Rd
man/GONNET.Rd
man/PAMn.Rd
man/TKF91.Rd
man/TKF92.Rd
man/TKF92HG.Rd
man/optim.phylo.wls.Rd
src/Makevars.in
src/Makevars.win
src/MathFunctions.c
src/MathFunctions.h
src/R_init_TKF.c
src/TKF91.c
src/TKF91.h
src/TKF92.c
src/TKF92.h
src/TKF92HG.c
src/TKF92HG.h
src/matrix.c
src/matrix.h
src/nlopt/TKF91_nlopt.c
src/nlopt/TKF91_nlopt.h
src/nlopt/TKF92HG_nlopt.c
src/nlopt/TKF92HG_nlopt.h
src/nlopt/TKF92_nlopt.c
src/nlopt/TKF92_nlopt.h
tests/testthat/test_ScoringMatrix.R
tests/testthat/test_TKF91.R
tests/testthat/test_TKF92.R
tests/testthat/test_TKF92HG.R
tests/testthat/test_optim.phylo.wls.R
