AAToInt: AA, DNA, RNA character set
In ge11232002/TKF: Pairwise Distance Estimation with TKF91 and TKF92 Model
Description
Usage
Arguments
Details
Value
Author(s)
Examples
View source: R/ScoringMatrix.R
Description
Some AA, DNA, RNA character set defined in this package and
functions to convert them into integers.
Usage
1
AAToInt(AA)
Arguments
AA
A vector of character.
Details
Each AA is converted to the position of that AA in AACharacterSet.
Value
A integer vector.
Author(s)
Ge Tan
Examples
1
2
3
4
5
6
7
library(seqinr)
fasta <- read.fasta(file.path(system.file("extdata", package="TKF"),
"pair1.fasta"),
seqtype="AA", set.attributes=FALSE)
AAToInt(fasta[[1]])
AACharacterSet
ge11232002/TKF documentation built on May 17, 2019, 12:13 a.m.
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Description Usage Arguments Details Value Author(s) Examples
View source: R/ScoringMatrix.R
Description
Some AA, DNA, RNA character set defined in this package and functions to convert them into integers.
Usage
1 | AAToInt(AA)
|
Arguments
AA |
A vector of character. |
Details
Each AA is converted to the position of that AA in AACharacterSet.
Value
A integer vector.
Author(s)
Ge Tan
Examples
1 2 3 4 5 6 7 | library(seqinr)
fasta <- read.fasta(file.path(system.file("extdata", package="TKF"),
"pair1.fasta"),
seqtype="AA", set.attributes=FALSE)
AAToInt(fasta[[1]])
AACharacterSet
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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