Description Usage Arguments Details Value Examples
Read an HPO OBO file (HPO) and write the edges of the DAG on a plain text file. The format of the file is a sequence of rows and each row corresponds to an edge represented through a pair of vertices separated by blanks.
1 | do.edges.from.HPO.obo(obofile = "hp.obo", file = "edge.file")
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obofile |
an HPO OBO file. The extension of the obofile can be or plain format (".txt") or compressed (".gz"). |
file |
name of the file of the edges to be written. The extension of the file can be or plain format (".txt") or compressed (".gz"). |
a faster and more flexible parser to handle obo file can be found here.
a text file representing the edges in the format: source destination (i.e. one row for each edge).
1 2 3 4 | ## Not run:
hpobo <- "http://purl.obolibrary.org/obo/hp.obo";
do.edges.from.HPO.obo(obofile=hpobo, file="hp.edge");
## End(Not run)
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