str.filter: str.filter

In gehara/Junkyardtools: Toolbox for genetic junkyard survival

Description

this function filters out individuals or loci with missing data according to a cut off percentage

Usage

## S3 method for class 'filter'
str(structure.file, cutoff = NULL, filter.loci = T,
  filter.samp = F)

Arguments

structure.file	a matrix or data frame object representing the structure-like genotype file
cutoff	float. A percentage cutoff between 0 and 1 to exclude loci or individuals with missing data. Defaut NULL.
filter.loci	logical. If TRUE loci with missing samples will be filtered out.
filter.samp	logical. If TRUE samples with missing loci will be filtered out.

Author(s)

Marcelo Gehara

gehara/Junkyardtools documentation built on Nov. 4, 2019, 1:04 p.m.