patternMatch4Parallel: patternMatch4Parallel

In genesofeve/GWCoGAPS:

Description

patternMatch4Parallel

Usage

patternMatch4Parallel(Ptot = BySet$P, nSets = nSets, cnt = Cut,
  minNS = minNS, cluster.method = "complete", ignore.NA = FALSE,
  bySet = FALSE, ...)

Arguments

Ptot	a matrix containing the total by set estimates of Pmean output from reOrderBySet
nSets	number of parallel sets used to generate Ptot
cnt	number of branches at which to cut dendrogram
minNS	minimum of individual set contributions a cluster must contain
cluster.method	the agglomeration method to be used for clustering
ignore.NA	logical indicating whether or not to ignore NAs from potential over dimensionalization. Default is FALSE.
bySet	logical indicating whether to return list of matched set solutions from Ptot
...

Value

a matrix of concensus patterns by samples. If bySet=TRUE then a list of the set contributions to each concensus pattern is also returned.

See Also

hclust

Examples

dontrun{
matchedPs<-PatternsMatchFN(Ptot=PBySet,nP=nFactor,nS=nSets,cnt=nFactor,minNS=minNS,bySet=FALSE)
}

genesofeve/GWCoGAPS documentation built on May 17, 2019, 1:10 a.m.