API for genome/sciclone
Detect subclones from genomic sequence data
| Global functions | |
|---|---|
| .onLoad | Source code |
| addCnToVafs | Man page Source code |
| addHighlightLegend | Man page Source code |
| addPoints | Man page |
| binomial.bmm.filter.clusters | Man page Source code |
| bmm.calculate.pvalue | Man page Source code |
| bmm.filter.clusters | Man page Source code |
| calculate.pvalue | Man page Source code |
| calculate.self.overlap | Man page Source code |
| cleanAndAddCN | Man page Source code |
| clusterVafs | Man page Source code |
| clusterWithBinomialBmm | Man page Source code |
| clusterWithBmm | Man page Source code |
| clusterWithGaussianBmm | Man page Source code |
| compute.binomial.error.bars | Man page Source code |
| drawScatterPlot | Man page Source code |
| excludeRegions | Man page Source code |
| gaussian.bmm.filter.clusters | Man page Source code |
| getClusterColors | Man page Source code |
| getConnectivityMatrix | Man page Source code |
| getDensity | Man page Source code |
| getOneSampleVafs | Man page Source code |
| getPeaks | Man page Source code |
| getPurity | Man page Source code |
| hardClusterAssignments | Man page Source code |
| initScClass | Man page Source code |
| reorderBetaClust | Man page Source code |
| reorderBinomialClust | Man page Source code |
| reorderClust | Man page Source code |
| reorderGaussianClust | Man page Source code |
| sc.plot1d | Man page Source code |
| sc.plot2d | Man page Source code |
| sc.plot2dWithMargins | Man page Source code |
| sc.plot3d | Man page Source code |
| scObject-class | Man page |
| sciClone | Man page Source code |
| writeClusterSummaryTable | Man page Source code |
| writeClusterTable | Man page Source code |
