API for genome/sciclone
Detect subclones from genomic sequence data

Global functions
addCnToVafs Man page Source code
addHighlightLegend Man page Source code
addPoints Man page
binomial.bmm.filter.clusters Man page Source code
bmm.calculate.pvalue Man page Source code
bmm.filter.clusters Man page Source code
calculate.pvalue Man page Source code
calculate.self.overlap Man page Source code
cleanAndAddCN Man page Source code
clusterVafs Man page Source code
clusterWithBinomialBmm Man page Source code
clusterWithBmm Man page Source code
clusterWithGaussianBmm Man page Source code
compute.binomial.error.bars Man page Source code
drawScatterPlot Man page Source code
excludeRegions Man page Source code
gaussian.bmm.filter.clusters Man page Source code
getClusterColors Man page Source code
getConnectivityMatrix Man page Source code
getDensity Man page Source code
getOneSampleVafs Man page Source code
getPeaks Man page Source code
getPurity Man page Source code
hardClusterAssignments Man page Source code
initScClass Man page Source code
onLoad Source code
reorderBetaClust Man page Source code
reorderBinomialClust Man page Source code
reorderClust Man page Source code
reorderGaussianClust Man page Source code
sc.plot1d Man page Source code
sc.plot2d Man page Source code
sc.plot2dWithMargins Man page Source code
sc.plot3d Man page Source code
scObject-class Man page
sciClone Man page Source code
writeClusterSummaryTable Man page Source code
writeClusterTable Man page Source code
genome/sciclone documentation built on May 14, 2017, 8:48 a.m.