API for gerstung-lab/MutationTimeR
Timing somatic point mutations and copy number gains

Global functions
.betaFromCi	Source code
.classWgd	Source code
.histBeta	Source code
.plotBB	Source code
.plotSv	Source code
.plotTiming	Source code
.plotVcf	Source code
.timeToBeta	Source code
MutationTimeR	Man page
addMetadataToHeader	Man page Source code
addMutTime	Man page Source code
classWgd	Man page Source code
classifyMutations	Man page Source code
computeMutCn	Source code
dbetabinom	Source code
defineMcnStates	Source code
dtrbetabinom	Source code
dtrbinom	Source code
getAltCount	Man page Source code
getClusterPower	Man page Source code
getHomozygousity	Man page Source code
getMetaEntry	Man page Source code
getPloidy	Man page Source code Source code Source code
getPurity	Man page Source code
getSex	Man page Source code
getSubclonalArchitecture	Man page Source code
getTumorCounts	Source code
getTumorDepth	Man page Source code
getWGDstatus	Man page Source code
loadBB	Source code
mcnHeader	Source code
mergeClusters	Source code
mtHeader	Source code
mtToTime	Source code
mutationTime	Man page Source code
pGainToTime	Source code
pbetabinom	Source code
piToTime	Source code
plotSample	Man page Source code
posteriorMutCN	Source code
ptrbetabinom	Source code
readVcf	Man page Source code
refLengths	Man page
simulateMutations	Source code
writeVcf	Man page Source code

gerstung-lab/MutationTimeR documentation built on Dec. 12, 2020, 9:29 p.m.

Note that we can't provide technical support on individual packages. You should contact the package authors for that.