getPloidy: Extract the average ploidy from copy number
In gerstung-lab/MutationTimeR: Timing somatic point mutations and copy number gains
Description
Usage
Arguments
Value
Author(s)
View source: R/MutationTime.R
View source: R/MutationTime.R
View source: R/MutationTime.R
Description
Extract the average ploidy from copy number
Get sample ploidy from VCF metadata
Usage
1
2
3
Arguments
cn
The 'GRanges' copy number data
VCF
object to query
Value
The numeric value of average ploidy across the genome.
The sample ploidy, or NULL if the metadata entry is not available
Author(s)
Moritz Gerstung
sd11
gerstung-lab/MutationTimeR documentation built on Dec. 12, 2020, 9:29 p.m.
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Description Usage Arguments Value Author(s)
View source: R/MutationTime.R View source: R/MutationTime.R View source: R/MutationTime.R
Description
Extract the average ploidy from copy number
Get sample ploidy from VCF metadata
Usage
1 2 3 |
Arguments
cn |
The 'GRanges' copy number data |
VCF |
object to query |
Value
The numeric value of average ploidy across the genome.
The sample ploidy, or NULL if the metadata entry is not available
Author(s)
Moritz Gerstung
sd11
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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