data/lookup.species.R

In gfcm/gfcmSTAR: Tools to Work with GFCM Stock Assessment Results (STAR)

lookup.species <- data.frame(
  Alpha
  =c("KTT","APG","APE","APU","QSC","LSJ","OUM","OUL","BTH","ALV","ASD","SHD",
     "CUI","TSD","SHC","SHZ","SAN","ABZ","ELE","ANT","FIM","RKQ","ARY","ARG",
     "MGR","ARS","ARI","ARA","GUR","ATB","AHH","SIL","BLT","FRI","FRZ","TRG",
     "TRI","GAR","BEN","CLX","BLE","BOY","BOG","LEF","CRA","POA","GSM","CRB",
     "KLK","CRE","BOC","CGX","RUB","HMY","TRE","CCP","CMR","CRG","COZ","EHI",
     "CEN","CEO","GUP","CPU","CYO","CEP","CBC","COC","BSK","SVE","CTZ","GUU",
     "MLR","HOL","CMK","CIT","CIL","HER","CLU","CLA","COE","COL","COU","DOL",
     "CSH","CRU","FCP","DYL","SCK","STT","JDP","PLS","DEC","DEP","DEL","BSS",
     "SPU","BSE","CET","ANN","SBZ","SHR","SWA","SRG","CTB","DON","AOM","ECH",
     "URX","SKX","EOI","EDT","OCM","ANA","ANE","EPI","GPW","EFJ","EPK","GPD",
     "GPX","EIK","OQM","ETX","RRH","LTA","GUG","MSH","FLY","FIO","GAD","COD",
     "ROL","GAG","SHO","GAS","GRQ","GPA","GBC","GBN","GOB","BRF","HXT","SBL",
     "HCZ","LBE","ORY","HUH","HYD","SLP","SQM","INV","BIL","SMA","SKJ","WRA",
     "USB","WRM","LFZ","LFX","POR","SPT","SFS","LDB","MEG","LEE","DAB","IOD",
     "SSB","PEE","MGA","MGC","LZS","SQU","SQC","SQR","ANK","MON","MNZ","SCR",
     "BUM","WHG","HKE","MBF","MPN","MNG","MKG","SSG","WHB","LEM","MOX","MOL",
     "BLI","LIN","MUF","MYZ","MUL","MUT","MUX","MUR","MMH","MUE","SDS","SMD",
     "MPT","SDV","MKU","EAG","MYL","MSM","NSQ","DCP","NAU","LIO","NNJ","NNZ",
     "NEP","SBS","OCT","OQD","OCN","OQT","OCC","ODL","OMZ","BOP","MZZ","OYF",
     "OST","SBA","SBR","PAC","PAX","RPG","SBP","PAA","CPR","VLO","SLO","PSL",
     "CRW","PDZ","URM","DPS","SJA","SCX","KUP","TGS","GIT","TIP","PEN","DPX",
     "FMS","GFB","FOR","FOX","FNT","FLE","GBR","LKT","PLE","FLX","POL","QPH",
     "WRF","PKS","BLU","SCD","BSH","UHQ","MPO","LPF","RJA","JRS","RJB","RJH",
     "RJI","RJC","RJF","JAM","RJE","JAI","RJM","RJN","RJO","JAY","SKA","RJU",
     "RAJ","SRX","RPN","RPW","GTF","RBC","RBX","CTG","TPS","OIL","SLX","FPP",
     "BON","PIL","SAA","SIX","SLM","SZX","LIB","UGU","PWT","CBM","CDX","VMA",
     "MAS","MAC","MAZ","SAU","COM","MAX","TUX","SCF","TUR","BLL","SNQ","BBS",
     "RSE","SCS","SCO","SYC","SCL","SYT","LOS","YLL","CTC","IAR","CTL","AMB",
     "BSX","CBR","SRJ","SRK","BAS","IGU","SRI","SPI","EGY","SOS","OAL","SOL",
     "SOX","RAZ","SOI","SBX","PRR","SBG","YRC","YRS","BAR","SPL","SPZ","BPI",
     "SPC","PIC","BRB","SPO","SPR","DGX","DGS","QUB","DGZ","AGN","ASK","MTS",
     "JCR","LIX","SDR","TWL","PUX","MSP","ALB","BFT","SQE","TTR","TTV","TRA",
     "POX","WEG","WEX","TOZ","HMM","JAA","JAX","HOM","TRV","CUT","LHT","GUN",
     "GUY","GUX","BIB","POD","UCA","COB","UPM","GOX","UUC","CLV","VEV","SWO",
     "XYN","JOD","GBO"),
  Scientific
  =c(
  "Acanthocardia tuberculata","Acipenser gueldenstaedtii","Acipenser stellatus",
  "Acipenser sturio","Aequipecten opercularis","Alepes djedaba",
  "Alloteuthis media","Alloteuthis subulata","Alopias superciliosus",
  "Alopias vulpinus","Alosa alosa","Alosa alosa, A. fallax","Alosa caspia",
  "Alosa fallax","Alosa pontica","Alosa spp","Ammodytes spp",
  "Ammodytes tobianus","Anguilla anguilla","Antimora rostrata","Aphia minuta",
  "Arca noae","Argentina sphyraena","Argentina spp","Argyrosomus regius",
  "Aristaeomorpha foliacea","Aristeidae","Aristeus antennatus",
  "Aspitrigla cuculus","Atherina boyeri","Atherina hepsetus","Atherinidae",
  "Auxis rochei","Auxis thazard","Auxis thazard, A. rochei",
  "Balistes carolinensis","Balistidae","Belone belone","Belonidae","Bivalvia",
  "Blenniidae","Bolinus brandaris","Boops boops","Bothidae","Brachyura",
  "Brama brama","Buglossidium luteum","Callinectes sapidus","Callista chione",
  "Cancer pagurus","Capros aper","Carangidae","Caranx crysos","Caranx rhonchus",
  "Caranx spp","Carcharhinus plumbeus","Carcinus aestuarii","Carcinus maenas",
  "Cardiidae","Centracanthus cirrus","Centrolophidae","Centrolophus niger",
  "Centrophorus granulosus","Centrophorus uyato","Centroscymnus coelolepis",
  "Cephalopoda","Cepola macrophthalma","Cerastoderma edule",
  "Cetorhinus maximus","Chamelea gallina","Chelidonichthys lastoviza",
  "Chelidonichthys lucerna","Chelon labrosus","Chimaeriformes",
  "Chromis chromis","Citharidae","Citharus linguatula","Clupea harengus",
  "Clupeoidei","Clupeonella cultriventris","Conger conger","Corallium rubrum",
  "Coris julis","Coryphaena hippurus","Crangon crangon","Crustacea",
  "Cyprinus carpio","Dactylopterus volitans","Dalatias licha","Dasyatidae",
  "Dasyatis pastinaca","Dasyatis violacea","Dentex dentex","Dentex gibbosus",
  "Dentex macrophthalmus","Dicentrarchus labrax","Dicentrarchus punctatus",
  "Dicentrarchus spp","Dicologlossa cuneata","Diplodus annularis",
  "Diplodus cervinus","Diplodus puntazzo","Diplodus sargus","Diplodus spp",
  "Diplodus vulgaris","Donax spp","Echelus myrus","Echinodermata","Echinoidea",
  "Elasmobranchii","Eledone cirrosa","Eledone moschata","Eledone spp",
  "Engraulis anchoita","Engraulis encrasicolus","Epigonus telescopus",
  "Epinephelus aeneus","Epinephelus caninus","Epinephelus costae",
  "Epinephelus marginatus","Epinephelus spp","Eriphia verrucosa",
  "Erugosquilla massavensis","Etmopterus spinax","Etrumeus teres",
  "Euthynnus alletteratus","Eutrigla gurnardus","Ex Mollusca","Exocoetidae",
  "Fistularia commersonii","Gadiformes","Gadus morhua","Gaidropsarus spp",
  "Galeorhinus galeus","Galeus melastomus","Gastropoda","Geryon longipes",
  "Gobiidae","Gobius cobitis","Gobius niger","Gobius spp",
  "Helicolenus dactylopterus","Heptranchias perlo","Hexanchus griseus",
  "Holocentridae","Homarus gammarus","Hoplostethus atlanticus","Huso huso",
  "Hydrolagus spp","Hydrurga leptonyx","Illex coindetii","Invertebrata",
  "Istiophoridae","Isurus oxyrinchus","Katsuwonus pelamis","Labridae",
  "Labrus bergylta","Labrus merula","Lagocephalus sceleratus",
  "Lagocephalus spp","Lamna nasus","Leiostomus xanthurus","Lepidopus caudatus",
  "Lepidorhombus boscii","Lepidorhombus whiffiagonis","Lichia amia",
  "Limanda limanda","Liocarcinus depurator","Lithognathus mormyrus",
  "Littorina littorea","Liza aurata","Liza ramada","Liza saliens",
  "Loliginidae, Ommastrephidae","Loligo spp","Loligo vulgaris",
  "Lophius budegassa","Lophius piscatorius","Lophius spp","Maja squinado",
  "Makaira nigricans","Merlangius merlangus","Merluccius merluccius",
  "Mesogobius batrachocephalus","Metapenaeus monoceros","Metapenaeus stebbingi",
  "Microchirus variegatus","Microcosmus sulcatus","Micromesistius poutassou",
  "Microstomus kitt","Mola mola","Mollusca","Molva dypterygia","Molva molva",
  "Mugil cephalus","Mugil soiuy","Mugilidae","Mullus barbatus","Mullus spp",
  "Mullus surmuletus","Muraena helena","Murex spp","Mustelus asterias",
  "Mustelus mustelus","Mustelus punctulatus","Mustelus spp",
  "Mycteroperca rubra","Myliobatidae","Myliobatis aquila",
  "Mytilus galloprovincialis","Nassarius mutabilis","Natantia",
  "Naucrates ductor","Necora puber","Nemipterus japonicus",
  "Nemipterus randalli","Nephrops norvegicus","Oblada melanura","Octopodidae",
  "Octopus defilippi","Octopus macropus","Octopus salutii","Octopus vulgaris",
  "Oedalechilus labeo","Ommastrephidae","Orcynopsis unicolor","Osteichthyes",
  "Ostrea edulis","Ostreidae","Pagellus acarne","Pagellus bogaraveo",
  "Pagellus erythrinus","Pagellus spp","Pagrus pagrus","Pagrus spp",
  "Palaemon adspersus","Palaemon serratus","Palinuridae","Palinurus elephas",
  "Palinurus mauritanicus","Palinurus spp","Pandalidae","Paracentrotus lividus",
  "Parapenaeus longirostris","Pecten jacobaeus","Pectinidae",
  "Penaeus japonicus","Penaeus kerathurus","Penaeus monodon",
  "Penaeus semisulcatus","Penaeus spp","Perciformes","Phalium saburon",
  "Phycis blennoides","Phycis phycis","Phycis spp","Phyllonotus trunculus",
  "Platichthys flesus","Plectorhinchus mediterraneus","Plesionika martia",
  "Pleuronectes platessa","Pleuronectiformes","Pollachius pollachius",
  "Polybius henslowii","Polyprion americanus","Pomadasys stridens",
  "Pomatomus saltatrix","Portunus pelagicus","Prionace glauca","Pterois miles",
  "Pteromylaeus bovinus","Pyrrhulina filamentosa","Raja alba","Raja asterias",
  "Raja batis","Raja brachyura","Raja circularis","Raja clavata",
  "Raja fullonica","Raja melitensis","Raja microocellata","Raja miraletus",
  "Raja montagui","Raja naevus","Raja oxyrinchus","Raja polystigma","Raja spp",
  "Raja undulata","Rajidae","Rajiformes","Rapana spp","Rapana venosa",
  "Rhinobatidae","Rhinobatos cemiculus","Rhinobatos rhinobatos",
  "Ruditapes decussatus","Ruditapes spp","Ruvettus pretiosus","Salmonoidei",
  "Sander lucioperca","Sarda sarda","Sardina pilchardus","Sardinella aurita",
  "Sardinella spp","Sarpa salpa","Saurida lessepsianus","Saurida undosquamis",
  "Scaeurgus unicirrhus","Scaridae","Sciaena umbra","Sciaenidae",
  "Scomber colias","Scomber japonicus","Scomber scombrus","Scomber spp",
  "Scomberesox saurus","Scomberomorus commerson","Scombridae","Scombroidei",
  "Scophthalmidae","Scophthalmus maximus","Scophthalmus rhombus",
  "Scorpaena notata","Scorpaena porcus","Scorpaena scrofa","Scorpaena spp",
  "Scorpaenidae","Scyliorhinus canicula","Scyliorhinus spp",
  "Scyliorhinus stellaris","Scyllaridae","Scyllarides latus",
  "Sepia officinalis","Sepia orbignyana","Sepiidae, Sepiolidae",
  "Seriola dumerili","Serranidae","Serranus cabrilla","Serranus hepatus",
  "Serranus scriba","Serranus spp","Siganus luridus","Siganus rivulatus",
  "Siganus spp","Solea aegyptiaca","Solea lascaris","Solea senegalensis",
  "Solea solea","Soleidae","Solen spp","Solenidae","Sparidae",
  "Sparisoma cretense","Sparus aurata","Sphyraena chrysotaenia",
  "Sphyraena sphyraena","Sphyraena spp","Sphyrna lewini","Sphyrna zygaena",
  "Spicara maena","Spicara smaris","Spicara spp","Spondyliosoma cantharus",
  "Spongiidae","Sprattus sprattus","Squalidae","Squalus acanthias",
  "Squalus blainville","Squalus spp","Squatina squatina","Squatinidae",
  "Squilla mantis","Stichopus regalis","Synodontidae","Synodus saurus",
  "Tellina spp","Tetraodontidae","Tetrapturus belone","Thunnus alalunga",
  "Thunnus thynnus","Todarodes sagittatus","Torpedo marmorata",
  "Torpedo torpedo","Trachinidae","Trachinotus spp","Trachinus draco",
  "Trachinus spp","Trachinus vipera","Trachurus mediterraneus",
  "Trachurus picturatus","Trachurus spp","Trachurus trachurus",
  "Trachypenaeus curvirostris","Trichiuridae","Trichiurus lepturus",
  "Trigla lyra","Trigla spp","Triglidae","Trisopterus luscus",
  "Trisopterus minutus","Umbrina canariensis","Umbrina cirrosa",
  "Upeneus moluccensis ","Upeneus spp","Uranoscopus scaber","Veneridae",
  "Venus verrucosa","Xiphias gladius","Xyrichtys novacula","Zeus faber",
  "Zosterisessor ophiocephalus"),
  English
  =c("Tuberculate cockle","Danube sturgeon(=Osetr)","Starry sturgeon",
     "Sturgeon","Queen scallop","Shrimp scad","Midsize squid",
     "European common squid","Bigeye thresher","Thresher","Allis shad",
     "Allis and twaite shads","Caspian shad","Twaite shad","Pontic shad",
     "Shads nei","Sandeels(=Sandlances) nei","Small sandeel","European eel",
     "Blue antimora","Transparent goby","Noah's ark","Argentine","Argentines",
     "Meagre","Giant red shrimp","Aristeid shrimps nei","Blue and red shrimp",
     "Red gurnard","Big-scale sand smelt","Mediterranean sand smelt",
     "Silversides(=Sand smelts) nei","Bullet tuna","Frigate tuna",
     "Frigate and bullet tunas","Grey triggerfish","Triggerfishes, durgons nei",
     "Garfish","Needlefishes, etc. nei","Clams, etc. nei","Combtooth blennies",
     "Purple dye murex","Bogue","Lefteye flounders nei","Marine crabs nei",
     "Atlantic pomfret","Solenette","Blue crab","Smooth callista","Edible crab",
     "Boarfish","Carangids nei","Blue runner","False scad",
     "Jacks, crevalles nei","Sandbar shark","Mediterranean shore crab",
     "Green crab","Cockles nei","Curled picarel","Ruffs, barrelfishes nei",
     "Rudderfish","Gulper shark","Little gulper shark","Portuguese dogfish",
     "Cephalopods nei","Red bandfish","Common edible cockle","Basking shark",
     "Striped venus","Streaked gurnard","Tub gurnard","Thicklip grey mullet",
     "Chimaeras, etc. nei","Damselfish","Citharids nei","Spotted flounder",
     "Atlantic herring","Clupeoids nei","Black and Caspian Sea sprat",
     "European conger","Sardinia coral","Rainbow wrasse","Common dolphinfish",
     "Common shrimp","Marine crustaceans nei","Common carp","Flying gurnard",
     "Kitefin shark","Stingrays, butterfly rays nei","Common stingray",
     "Pelagic stingray","Common dentex","Pink dentex","Large-eye dentex",
     "European seabass","Spotted seabass","Seabasses nei","Wedge sole",
     "Annular seabream","Zebra seabream","Sharpsnout seabream","White seabream",
     "Sargo breams nei","Common two-banded seabream","Donax clams",
     "Painted eel","Echinoderms","Sea urchins, etc. nei",
     "Sharks, rays, skates, etc. nei","Horned octopus","Musky octopus",
     "Horned and musky octopuses","Argentine anchovy","European anchovy",
     "Black cardinal fish","White grouper","Dogtooth grouper",
     "Goldblotch grouper","Dusky grouper","Groupers nei","Warty crab",
     "Red sea mantis shrimp","Velvet belly","Red-eye round herring",
     "Little tunny(=Atl.black skipj)","Grey gurnard","Marine shells nei",
     "Flyingfishes nei","Bluespotted cornetfish","Gadiformes nei",
     "Atlantic cod","Rocklings nei","Tope shark","Blackmouth catshark",
     "Gastropods nei","Mediterranean geryon","Gobies nei","Giant goby",
     "Black goby","Atlantic gobies nei","Blackbelly rosefish",
     "Sharpnose sevengill shark","Bluntnose sixgill shark","Squirrelfishes nei",
     "European lobster","Orange roughy","Beluga","Ratfishes nei","Leopard seal",
     "Broadtail shortfin squid","Aquatic invertebrates nei",
     "Marlins,sailfishes,etc. nei","Shortfin mako","Skipjack tuna",
     "Wrasses, hogfishes, etc. nei","Ballan wrasse","Brown wrasse",
     "Silver-cheeked toadfish",NA,"Porbeagle","Spot Croaker",
     "Silver scabbardfish","Four-spot megrim","Megrim","Leerfish","Common dab",
     "Blue-leg swimcrab","Sand steenbras","Common periwinkle",
     "Golden grey mullet","Thinlip grey mullet","Leaping mullet",
     "Various squids nei","Common squids nei","European squid",
     "Blackbellied angler","Angler(=Monk)","Monkfishes nei",
     "Spinous spider crab","Blue marlin","Whiting","European hake","Knout goby",
     "Speckled shrimp","Peregrine shrimp","Thickback sole","Grooved sea squirt",
     "Blue whiting(=Poutassou)","Lemon sole","Ocean sunfish",
     "Marine molluscs nei","Blue ling","Ling","Flathead grey mullet",
     "So-iuy mullet","Mullets nei","Red mullet","Surmullets(=Red mullets) nei",
     "Surmullet","Mediterranean moray","Murex","Starry smooth-hound",
     "Smooth-hound","Blackspotted smooth-hound","Smooth-hounds nei",
     "Mottled grouper","Eagle rays nei","Common eagle ray",
     "Mediterranean mussel","Changeable nassa","Natantian decapods nei",
     "Pilotfish","Velvet swimcrab","Japanese threadfin bream",
     "Randall's threadfin bream","Norway lobster","Saddled seabream",
     "Octopuses, etc. nei","Lilliput longarm octopus","White-spotted octopus",
     "Spider octopus","Common octopus","Boxlip mullet",
     "Ommastrephidae squids nei","Plain bonito","Marine fishes nei",
     "European flat oyster","Flat and cupped oysters nei","Axillary seabream",
     "Blackspot(=red) seabream","Common pandora","Pandoras nei","Red porgy",
     "Pargo breams nei","Baltic prawn","Common prawn","Spiny lobsters nei",
     "Common spiny lobster","Pink spiny lobster","Palinurid spiny lobsters nei",
     "Pandalid shrimps nei","Stony sea urchin","Deep-water rose shrimp",
     "Great Mediterranean scallop","Scallops nei","Kuruma prawn",
     "Caramote prawn","Giant tiger prawn","Green tiger prawn",
     "Penaeus shrimps nei","Demersal percomorphs nei","Saburon helmet",
     "Greater forkbeard","Forkbeard","Forkbeards nei","Banded murex",
     "European flounder","Rubberlip grunt","Golden shrimp","European plaice",
     "Flatfishes nei","Pollack","Henslow's swimming crab","Wreckfish",
     "Striped piggy","Bluefish","Blue swimming crab","Blue shark",
     "Devil firefish","Bull ray",NA,"White skate","Mediterranean starry ray",
     "Blue skate","Blonde ray","Sandy ray","Thornback ray","Shagreen ray",
     "Maltese ray","Small-eyed ray","Brown ray","Spotted ray","Cuckoo ray",
     "Longnosed skate","Speckled ray","Raja rays nei","Undulate ray",
     "Rays and skates nei","Rays, stingrays, mantas nei","Sea snails",
     "Thomas' rapa whelk","Guitarfishes, etc. nei","Blackchin guitarfish",
     "Common guitarfish","Grooved carpet shell","Carpet shells nei","Oilfish",
     "Salmonoids nei","Pike-perch","Atlantic bonito",
     "European pilchard(=Sardine)","Round sardinella","Sardinellas nei",
     "Salema","Lessepsian lizardfish","Brushtooth lizardfish","Unihorn octopus",
     "Parrotfishes nei","Brown meagre","Croakers, drums nei",
     "Atlantic chub mackerel","Pacific chub mackerel","Atlantic mackerel",
     "Scomber mackerels nei","Atlantic saury","Narrow-barred Spanish mackerel",
     "Mackerels nei","Tuna-like fishes nei","Turbots nei","Turbot","Brill",
     "Small red scorpionfish","Black scorpionfish","Red scorpionfish",
     "Scorpionfishes, rockfishes nei","Scorpionfishes, redfishes nei",
     "Small-spotted catshark","Catsharks, nursehounds nei","Nursehound",
     "Slipper lobsters nei","Mediterranean slipper lobster","Common cuttlefish",
     "Pink cuttlefish","Cuttlefish, bobtail squids nei","Greater amberjack",
     "Groupers, seabasses nei","Comber","Brown comber","Painted comber",
     "Combers nei","Dusky spinefoot","Marbled spinefoot",
     "Spinefeet(=Rabbitfishes) nei","Egyptian sole","Sand sole",
     "Senegalese sole","Common sole","Soles nei","Solen razor clams nei",
     "Razor clams, knife clams nei","Porgies, seabreams nei","Parrotfish",
     "Gilthead seabream","Yellowstripe barracuda","European barracuda",
     "Barracudas nei","Scalloped hammerhead","Smooth hammerhead",
     "Blotched picarel","Picarel","Picarels nei","Black seabream","Sponges",
     "European sprat","Dogfish sharks nei","Picked dogfish","Longnose spurdog",
     "Dogfishes nei","Angelshark","Angelsharks, sand devils nei",
     "Spottail mantis squillid","Royal cucumber","Lizardfishes nei",
     "Atlantic lizardfish","Tellins nei","Puffers nei",
     "Mediterranean spearfish","Albacore","Atlantic bluefin tuna",
     "European flying squid","Marbled electric ray","Common torpedo",
     "Weeverfishes nei","Pompanos nei","Greater weever","Weevers nei",
     "Lesser weever","Mediterranean horse mackerel","Blue jack mackerel",
     "Jack and horse mackerels nei","Atlantic horse mackerel",
     "Southern rough shrimp","Hairtails, scabbardfishes nei",
     "Largehead hairtail","Piper gurnard","Gurnards nei",
     "Gurnards, searobins nei","Pouting(=Bib)","Poor cod",
     "Canary drum(=Baardman)","Shi drum","Goldband goatfish","Goatfishes",
     "Stargazer","Venus clams nei","Warty venus","Swordfish","Pearly razorfish",
     "John dory","Grass goby"), stringsAsFactors=FALSE)