Files in ggPMXdevelopment/ggPMX
'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME Models

.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug-and-enhancement-ticket.md
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/.gitignore
R/assertions.R R/classInt.R R/config.R R/generics.R R/ggPMX-options.R R/ggPMX-package.R R/ggforce-facet-paginate.R R/gpar.R R/nlmixr.R R/nonmem_reader.R R/param_table.R R/plot-base.R R/plot-density.R R/plot-distribution.R R/plot-eta-cov.R R/plot-eta-pairs.R R/plot-individual.R R/plot-qq.R R/plot-residual.R R/plot-themes.R R/plot-vpc.R R/pmx-add-plot.R R/pmx-all-compute.R R/pmx-all-plots.R R/pmx-data.R R/pmx-filter.R R/pmx-plots-density.R R/pmx-plots-distibution.R R/pmx-plots-eta-cov.R R/pmx-plots-individual.R R/pmx-plots-matrix.R R/pmx-plots-quantile.R R/pmx-plots-scatter.R R/pmx-plots-vpc.R R/pmx-post_load.R R/pmx-reader.R R/pmx-report.R R/pmxClass.R R/pmx_list_nm_tables.R R/pmx_manual_import.R R/pmx_read_nm_files.R R/pmx_read_nm_model.R R/pmx_read_nm_tables.R R/pmx_utils_nonmem_reader.R R/read_extfile.R R/utils.R R/zzz.R README.Rmd README.md
ggPMX.Rproj
inst/examples/controller.R
inst/examples/custom_inputs.yaml
inst/examples/distribution.R inst/examples/endpoint.R inst/examples/eta_cov.R inst/examples/eta_matrix.R inst/examples/ggpmx_nlmixr.R inst/examples/individual.R
inst/examples/plots.yaml
inst/examples/pmx-settings.R inst/examples/pmx_config.R inst/examples/pmx_nm.R inst/examples/pmx_report.R inst/examples/qq.R inst/examples/residual.R inst/examples/templates/custom_report.Rmd inst/examples/templates/misc.Rmd inst/examples/uc_review.Rmd inst/examples/vpc.R inst/extra/run-oq.R
inst/init/abbrev.yaml
inst/init/defaults.yaml
inst/init/gpar.yaml
inst/init/standing.ppmx
inst/rmarkdown/templates/individual/skeleton/skeleton.Rmd
inst/rmarkdown/templates/individual/template.yaml
inst/rmarkdown/templates/standing/skeleton/skeleton.Rmd
inst/rmarkdown/templates/standing/template.yaml
inst/templates/mlx/standing.ipmx
inst/templates/mlx18/standing.ipmx
inst/templates/mlx18/standing_old.ipmx
inst/testdata/1_popPK_model/PKdata_ggPMX.csv
inst/testdata/1_popPK_model/RESULTS/.svn/all-wcprops
inst/testdata/1_popPK_model/RESULTS/.svn/entries
inst/testdata/1_popPK_model/RESULTS/.svn/prop-base/project.mat.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/prop-base/results.mat.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/prop-base/saem.png.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/correlationEstimates_lin.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/covariatesSummary.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/estimates.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/fimTransPop_lin.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/fim_lin.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/finegrid.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/fulltimes.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/indiv_eta.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/indiv_parameters.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/individualContributionToLL.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/jacobian.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/popPKmodel_MLXTRAN.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/pop_parameters.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/predictions.txt.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/project.mat.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/project.xmlx.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/results.mat.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/results.ps.svn-base
inst/testdata/1_popPK_model/RESULTS/.svn/text-base/saem.png.svn-base
inst/testdata/1_popPK_model/RESULTS/estimates.txt
inst/testdata/1_popPK_model/RESULTS/finegrid.txt
inst/testdata/1_popPK_model/RESULTS/fulltimes.txt
inst/testdata/1_popPK_model/RESULTS/indiv_eta.txt
inst/testdata/1_popPK_model/RESULTS/indiv_parameters.txt
inst/testdata/1_popPK_model/RESULTS/pop_parameters.txt
inst/testdata/1_popPK_model/RESULTS/predictions.txt
inst/testdata/1_popPK_model/project.mlxtran
inst/testdata/extdata/catab001.csv
inst/testdata/extdata/cotab001
inst/testdata/extdata/custom_name.lst
inst/testdata/extdata/custom_sim.lst
inst/testdata/extdata/for_testing/predictions.csv
inst/testdata/extdata/for_testing/sim.csv
inst/testdata/extdata/mx19_2.csv
inst/testdata/extdata/patab001
inst/testdata/extdata/run001.coi
inst/testdata/extdata/run001.cor
inst/testdata/extdata/run001.cov
inst/testdata/extdata/run001.ext
inst/testdata/extdata/run001.grd
inst/testdata/extdata/run001.lst
inst/testdata/extdata/run001.mod
inst/testdata/extdata/run001.phi
inst/testdata/extdata/run001.shk
inst/testdata/extdata/sdtab001
inst/testdata/extdata/sdtab002
inst/testdata/extdata/simtab001.zip
inst/testdata/pk_pd/RESULTS/estimates.txt
inst/testdata/pk_pd/RESULTS/finegrid1.txt
inst/testdata/pk_pd/RESULTS/finegrid2.txt
inst/testdata/pk_pd/RESULTS/indiv_eta.txt
inst/testdata/pk_pd/RESULTS/indiv_parameters.txt
inst/testdata/pk_pd/RESULTS/pop_parameters.txt
inst/testdata/pk_pd/RESULTS/predictions1.txt
inst/testdata/pk_pd/RESULTS/predictions2.txt
inst/testdata/pk_pd/pk_pd.csv
inst/testdata/pk_pd/pk_pd.mlxtran
inst/testdata/theophylline/Monolix/estimates.txt
inst/testdata/theophylline/Monolix/finegrid.txt
inst/testdata/theophylline/Monolix/indiv_eta.txt
inst/testdata/theophylline/Monolix/pop_parameters.txt
inst/testdata/theophylline/Monolix/predictions.txt
inst/testdata/theophylline/data_pk.csv
inst/testdata/theophylline/sim.csv
man/FacetWrapPaginate.Rd man/abbrev.Rd man/add_draft.Rd man/distrib.Rd man/eta_cov.Rd man/eta_cov_plot.Rd man/eta_distribution_plot.Rd man/eta_pairs.Rd man/facet_wrap_paginate.Rd
man/figures/README-example-1.png
man/figures/README-illustrate_diagnostic-1.png
man/figures/README-illustrate_diagnostic-2.png
man/figures/README-illustrate_diagnostic-3.png
man/figures/README-illustrate_diagnostic-4.png
man/figures/README-illustrate_diagnostic-5.png
man/figures/README-settings_cat_labels-1.png
man/figures/README-settings_cat_labels2-1.png
man/figures/README-settings_cat_labels3-1.png
man/figures/README-settings_color_scales_local-1.png
man/figures/README-settings_solor_scales-1.png
man/figures/README-settings_solor_scales_a-1.png
man/figures/README-settings_use.abbrev-1.png
man/figures/README-settings_use.finegrid-1.png
man/figures/README-shrink_plot_box-1.png
man/figures/README-shrink_plot_hist-1.png
man/figures/README-shrink_plot_no-1.png
man/figures/README-shrink_plot_strat-1.png
man/figures/README-shrink_plot_var-1.png
man/figures/README-unnamed-chunk-14-1.png
man/figures/README-unnamed-chunk-16-1.png
man/figures/README-unnamed-chunk-17-1.png
man/figures/README-unnamed-chunk-18-1.png
man/figures/README-unnamed-chunk-19-1.png
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man/figures/README-unnamed-chunk-29-1.png
man/figures/README-unnamed-chunk-30-1.png
man/figures/README-unnamed-chunk-41-1.png
man/figures/ggPMX_arch.png
man/figures/ggPMX_cheat_sheet_0_9_4.png
man/figures/ggpmx_example1.png
man/figures/logo.jpg
man/getPmxOption.Rd man/get_abbrev.Rd man/get_cats.Rd man/get_conts.Rd man/get_covariates.Rd man/get_data.Rd man/get_occ.Rd man/get_plot.Rd man/get_plot_config.Rd man/get_strats.Rd man/ggPMX.Rd man/gtable_remove_grobs.Rd man/individual.Rd man/input_finegrid.Rd man/is.pmx_gpar.Rd man/l_left_join.Rd man/load_config.Rd man/load_data_set.Rd man/load_source.Rd man/n_pages.Rd man/param_table.Rd man/parse_mlxtran.Rd man/pk_occ.Rd man/pk_pd.Rd man/plot_names.Rd man/plot_pmx.Rd man/plot_pmx.distrib.Rd man/plot_pmx.eta_cov.Rd man/plot_pmx.eta_pairs.Rd man/plot_pmx.individual.Rd man/plot_pmx.pmx_dens.Rd man/plot_pmx.pmx_gpar.Rd man/plot_pmx.pmx_qq.Rd man/plot_pmx.residual.Rd man/plot_shrink.Rd man/plots.Rd man/pmx.Rd man/pmxOptions.Rd man/pmx_bloq.Rd man/pmx_combine_tables.Rd man/pmx_comp_shrink.Rd man/pmx_config.Rd man/pmx_copy.Rd man/pmx_cov.Rd man/pmx_dens.Rd man/pmx_endpoint.Rd man/pmx_file_path.Rd man/pmx_filter.Rd man/pmx_get_configs.Rd man/pmx_get_extension.Rd man/pmx_gpar.Rd man/pmx_index_table.Rd man/pmx_is.nm.table.list.Rd man/pmx_list_nm_tables.Rd man/pmx_list_nm_tables_manual.Rd man/pmx_make_extension.Rd man/pmx_manual_nm_import.Rd man/pmx_merge_firstonly.Rd man/pmx_msg.Rd man/pmx_nlmixr.Rd man/pmx_nm.Rd man/pmx_parse_nm_files.Rd man/pmx_plot.Rd man/pmx_plot_cats.Rd man/pmx_plot_eta_matrix.Rd man/pmx_plot_individual.Rd man/pmx_plot_iwres_dens.Rd man/pmx_plot_vpc.Rd man/pmx_qq.Rd man/pmx_qq_plot.Rd man/pmx_raw_to_tibble.Rd man/pmx_read_args.Rd man/pmx_read_funs.Rd man/pmx_read_nm_files.Rd man/pmx_read_nm_model.Rd man/pmx_read_nm_tables.Rd man/pmx_register_plot.Rd man/pmx_report.Rd man/pmx_report_template.Rd man/pmx_settings.Rd man/pmx_sim.Rd man/pmx_theme.Rd man/pmx_tidyr_new_interface.Rd man/pmx_update.Rd man/pmx_update_extension.Rd man/pmx_vpc.Rd man/pmx_vpc_bin.Rd man/pmx_vpc_ci.Rd man/pmx_vpc_obs.Rd man/pmx_vpc_pi.Rd man/pmx_vpc_rug.Rd man/print.abbreviation.Rd man/print.configs.Rd man/print.pmxClass.Rd man/print.pmxConfig.Rd man/print.pmx_gpar.Rd man/read_extfile.Rd man/read_input.Rd man/read_mlx_ind_est.Rd man/read_mlx_par_est.Rd man/read_mlx_pred.Rd man/reexports.Rd man/residual.Rd man/residual_scatter.Rd man/set_abbrev.Rd man/set_data.Rd man/set_plot.Rd man/sub-.pmx_gpar.Rd man/theophylline.Rd man/wrap_formula.Rd tests/testthat.R tests/testthat/helper-pmxClass.R tests/testthat/helper-reader.R tests/testthat/helper-update_plots.R tests/testthat/test-assertions.R tests/testthat/test-config.R tests/testthat/test-ggforce-facet-paginate.R tests/testthat/test-gpar.R tests/testthat/test-nonmem_reader.R tests/testthat/test-param_table.R tests/testthat/test-plot-defaults.R tests/testthat/test-plot-density.R tests/testthat/test-plot-distribution.R tests/testthat/test-plot.R tests/testthat/test-pmx-all-compute.R tests/testthat/test-pmx-all-plots.R tests/testthat/test-pmx-plots-scatter.R tests/testthat/test-pmxClass.R tests/testthat/test-pmx_filter.R tests/testthat/test-pmx_options.R tests/testthat/test-pmx_update.R tests/testthat/test-reader.R tests/testthat/test-shrinkage.R tests/testthat/test-utils.R
vignettes/.install_extras
vignettes/bloq.Rmd
vignettes/fit.rds
vignettes/ggPMX-guide.Rmd vignettes/ggPMX-nlmixr.Rmd
vignettes/ggPMX_arch.png
ggPMXdevelopment/ggPMX documentation built on Jan. 24, 2021, 3:07 a.m.