getOrthos: getOrthologs
In ggedman/orthofindR: Tool for defining gene orthology across species
Description
Usage
Arguments
Value
Description
Get all one-to-one orthologs between a given species and a desired species
Usage
1
getOrthos(input_org, output_org, one2one)
Arguments
input_org
Species you are starting from. This should be in the latin name format. i.e. Human, Homo Sapien should be "hsapiens"
output_org
Species you want to know the orthologs in. Same format as input_org.
one2one
Specifies if one-2-one orthology is perferred. If set to TRUE, will only return orthology for one-2-one orthologs
Value
data frame with all one-to-one orthologs between specified species
ggedman/orthofindR documentation built on Nov. 20, 2019, 9:02 p.m.
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Description Usage Arguments Value
Description
Get all one-to-one orthologs between a given species and a desired species
Usage
1 | getOrthos(input_org, output_org, one2one)
|
Arguments
input_org |
Species you are starting from. This should be in the latin name format. i.e. Human, Homo Sapien should be "hsapiens" |
output_org |
Species you want to know the orthologs in. Same format as input_org. |
one2one |
Specifies if one-2-one orthology is perferred. If set to TRUE, will only return orthology for one-2-one orthologs |
Value
data frame with all one-to-one orthologs between specified species
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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