Fstat.output: Fstat.output
In gilles-guillot/Geneland: Clustering of living organisms from geo-referenced genetic and/or morphometrics data
Description
Computes F statistics according to Weir and Cockerham's
estimators. Missing values are allowed but as of today, the NA code is only treated as an extra
allele which might bias the result. This function should not be used on haploid data.
@param coordinates Matrix with one line per individual and two columns
@param genotypes Genotypes of individuals. A matrix with one line per
individual and 2 columns per locus
@param burnin Integer: number of saved iterations to discard.
@param ploidy Integer: 1 or 2 (default is 2).
Do not use for haploid data.
@param path.mcmc Path to output files directory
Usage
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Fstat.output(
coordinates = NULL,
genotypes,
ploidy = 2,
burnin = NULL,
path.mcmc
)
Value
A list with components
Pairwise.Fis (matrix of real numbers estimating the pairwise Fis) and
Pairwise.Fst (matrix of real numbers estimating the pairwise Fs
gilles-guillot/Geneland documentation built on Feb. 24, 2020, 11:44 a.m.
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Description
Computes F statistics according to Weir and Cockerham's estimators. Missing values are allowed but as of today, the NA code is only treated as an extra allele which might bias the result. This function should not be used on haploid data. @param coordinates Matrix with one line per individual and two columns @param genotypes Genotypes of individuals. A matrix with one line per individual and 2 columns per locus @param burnin Integer: number of saved iterations to discard. @param ploidy Integer: 1 or 2 (default is 2). Do not use for haploid data. @param path.mcmc Path to output files directory
Usage
1 2 3 4 5 6 7 | Fstat.output(
coordinates = NULL,
genotypes,
ploidy = 2,
burnin = NULL,
path.mcmc
)
|
Value
A list with components Pairwise.Fis (matrix of real numbers estimating the pairwise Fis) and Pairwise.Fst (matrix of real numbers estimating the pairwise Fs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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