PlotFreq: PlotFreq

In gilles-guillot/Geneland: Clustering of living organisms from geo-referenced genetic and/or morphometrics data

Description

Plot the trace of allele frequencies in present time population and optionnaly print it. for allele iall of locus iloc

Usage

PlotFreq(path.mcmc,ipop,iloc,iall,printit=FALSE,path)
 @param path.mcmc  Path to output files directory 
 @param ipop Integer number : index of population
 @param iloc Integer number : index of locus
 @param iall Integer number : index of allele. If MCMC
    was launched with option filter.null.alleles=TRUE, an extra
    fictive allele standing for putative null alleles is created. It
    estimated frequency can be also plotted. If there is say, 5 alleles
    at a locus, the estimated frequency of null alleles can be seen
    invoking PlotFreq with iall=6.
 @param printit Logical : if TRUE, figures are also printed
 @param path Character : Path to directory where figures
    should be printed

gilles-guillot/Geneland documentation built on Feb. 24, 2020, 11:44 a.m.