API for ginnyintifa/GPD

Global functions
annotate_mc3_pc_position_info Source code
annotate_snpeff_combine_pc_position_info Source code
cdr_tidy_up_for_model Source code
combine_chr_data Source code
divide_germline_to_pc_npc Source code
divide_somatic_to_pc_npc Source code
fit_survival_model Source code
fit_survival_model_no_gender Source code
fit_survival_model_with_bpiu_germline Source code
fit_survival_model_with_bpiu_germline_no_gender Source code
fit_survival_model_with_germline Source code
gene_counts_cdr_clinical_unite Source code
gene_level_counts_cdr_clinical_unite Source code
gene_level_matrix Source code
germline_extraction_annotation_pos Man page Source code
germline_piu_mapping Man page Source code
get_cancer_type_col_id Source code
locus_counts_cdr_clinical_unite Source code
locus_level_matrix Source code
mc3_map_npc Source code
mc3_map_uni_piu Source code
multivariate_cox_model_with_interaction Man page Source code
multivariate_cox_model_with_interaction_no_gender Source code
parse_annotation Source code
parse_row_col Source code
piu_counts_cdr_clinical_unite Source code
select_cancer_mc3 Source code
snpeff_combine_map_npc Source code
snpeff_combine_map_uni_piu Source code
snpeff_record_whole_mutation_in_cancer Source code
somatic_extraction_annotation_pos Man page Source code
somatic_piu_mapping Man page Source code
summarise_piu_towards_gene Source code
univariate_cox_model_for_gene_level_summary_count Man page Source code
univariate_cox_model_for_somatic_locus_piu_gene Man page Source code
ginnyintifa/GPD documentation built on Nov. 10, 2018, 11:17 a.m.