byCluster: By Cluster

In girke-lab/ChemmineR: Cheminformatics Toolkit for R

By Cluster

Description

Re-organize a vector valued clustering into an list which groups cluster members together

Usage

byCluster(clustering, excludeSingletons = TRUE)

Arguments

clustering	A named vector in which the names are cluster members and the values are cluster labels. This is format output by jarvisPatrick.
excludeSingletons	If true only clusters with more than 1 member will be in the output, otherwise all clusters will be used.

Value

A list with a slot for each cluster. Each slot of the list is a vector containing the cluster members.

Author(s)

Kevin Horan

See Also

jarvisPatrick

Examples

	data(apset)
	cl = jarvisPatrick(nearestNeighbors(apset,cutoff=0.6),k=2)
	print(byCluster(cl))

girke-lab/ChemmineR documentation built on July 28, 2023, 10:36 a.m.