adjustGraph: IFC Graph Adjustment

In gitdemont/IFC: Tools for Imaging Flow Cytometry

IFC Graph Adjustment

Description

Helper to readjust 'IFC_data' graphs in case of missing feature, region, population.

Usage

adjustGraph(obj, graph, adjust_graph = TRUE, ...)

Arguments

obj	an object of class 'IFC_data' extracted by ExtractFromDAF(extract_features = TRUE) or ExtractFromXIF(extract_features = TRUE).
graph	a graph from 'obj' or a list that can be coerced by buildGraph.
adjust_graph	whether to try to adjust graph(s) when possible. Default is TRUE. -TRUE, graph(s) will be kept if possible using only regions, pops it depends that can be found in 'obj', -FALSE, graph(s) will be kept only if all features, regions, pops it refers to are found in 'obj', -NA, graph(s) will be removed no matter if features, regions, pops it refers to are found in 'obj'.
...	other arguments to be passed.

Value

the adjusted graph.

gitdemont/IFC documentation built on Feb. 20, 2025, 12:55 a.m.