cpp_decomp: IFC_object Decompression
In gitdemont/IFC: Tools for Imaging Flow Cytometry
cpp_decomp R Documentation
IFC_object Decompression
Description
Operates decompression of compressed image stored in TIFF file.
Arguments
fname
string, path to file.
offset
std::size_t, position of the beginning of compressed image.
nbytes
uint32_t, number of bytes of compressed image.
imgWidth
R_len_t, Width of the decompressed image. Default is 1.
imgHeight
R_len_t, Height of the decompressed image. Default is 1.
nb_channels
R_len_t, number of channels of the decompressed image. Default is 1.
removal
uint8_t, object removal method. Only apply for 30818 compression. Default is 0.
-1, for clipped removal: height OR width clipped pixels will be set to -1.
-2, height clipped removal: height clipped pixels will be set to -1.
-3, width clipped removal: width clipped pixels will be set to -1.
-4, only keep background: background pixels will be set to 1 and all others to 0.
-5, only keep foreground: foreground pixels will be set to 1 and all others to 0.
compression
uint32_t, compression algorithm used. Default is 30818.
verbose
bool, whether to display information (use for debugging purpose). Default is false.
Source
For image decompression, Lee Kamentsky's code porting from https://github.com/ome/bioformats/blob/4146b9a1797501f0fec7d6cfe69124959bff96ee/components/formats-bsd/src/loci/formats/in/FlowSightReader.java
cited in https://linkinghub.elsevier.com/retrieve/pii/S1046-2023(16)30291-2
BSD implementations of Bio-Formats readers and writers
Copyright (C) 2005 - 2017 Open Microscopy Environment:
- Board of Regents of the University of Wisconsin-Madison
- Glencoe Software, Inc.
- University of Dundee
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
gitdemont/IFC documentation built on Feb. 20, 2025, 12:55 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| cpp_decomp | R Documentation |
IFC_object Decompression
Description
Operates decompression of compressed image stored in TIFF file.
Arguments
fname |
string, path to file. |
offset |
std::size_t, position of the beginning of compressed image. |
nbytes |
uint32_t, number of bytes of compressed image. |
imgWidth |
R_len_t, Width of the decompressed image. Default is 1. |
imgHeight |
R_len_t, Height of the decompressed image. Default is 1. |
nb_channels |
R_len_t, number of channels of the decompressed image. Default is 1. |
removal |
uint8_t, object removal method. Only apply for 30818 compression. Default is 0. |
compression |
uint32_t, compression algorithm used. Default is 30818. |
verbose |
bool, whether to display information (use for debugging purpose). Default is false. |
Source
For image decompression, Lee Kamentsky's code porting from https://github.com/ome/bioformats/blob/4146b9a1797501f0fec7d6cfe69124959bff96ee/components/formats-bsd/src/loci/formats/in/FlowSightReader.java
cited in https://linkinghub.elsevier.com/retrieve/pii/S1046-2023(16)30291-2
BSD implementations of Bio-Formats readers and writers
Copyright (C) 2005 - 2017 Open Microscopy Environment:
- Board of Regents of the University of Wisconsin-Madison
- Glencoe Software, Inc.
- University of Dundee
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.