data_add_regions: Add Region to IFC_data Object

In gitdemont/IFC: Tools for Imaging Flow Cytometry

Add Region to IFC_data Object

Description

Adds regions to an already existing 'IFC_data' object.

Usage

data_add_regions(obj, regions, ...)

Arguments

obj	an 'IFC_data' object extracted by ExtractFromDAF(extract_features = TRUE) or ExtractFromXIF(extract_features = TRUE).
regions	a list of region(s) to add to obj. Each element of this list will be coerced by buildRegion.
...	Other arguments to be passed.

Details

A warning will be thrown if a provided region is already existing in 'obj'.
In such a case this region will not be added to 'obj'.
If any input population is not well defined and can't be created then an error will occur.

Value

an IFC_data object with regions added.

Examples

if(requireNamespace("IFCdata", quietly = TRUE)) {
  ## use a daf file
  file_daf <- system.file("extdata", "example.daf", package = "IFCdata")
  daf <- ExtractFromDAF(fileName = file_daf)
  ## copy 1st region found in daf
  reg <- daf$regions[[1]]
  if(length(reg) != 0) {
    reg_copy <- reg
    ## modify region label and x boundaries
    reg_copy$label <- paste0(reg_copy$label,"_copy")
    reg_copy$x <- reg_copy$x*0.9
    ## create new object with this new region
    dafnew <- data_add_regions(obj = daf, regions = list(reg_copy))
  }
} else {
  message(sprintf('Please run `install.packages("IFCdata", repos = "%s", type = "source")` %s',
                  'https://gitdemont.github.io/IFCdata/',
                  'to install extra files required to run this example.'))
}

gitdemont/IFC documentation built on Feb. 20, 2025, 12:55 a.m.