pathway_comparison: Projection and comparison between pathways

In github-gs/QPA: Quantitative Pathway Analysis

Description

This function makes projection and comparison between pathways. The output contains pathway ID and p-value. P-value<0.05 was considered significantly different.

Usage

pathway_comparison(profile1,profile2,pathway_info)

Arguments

profile1	A dataframe that generated by function pathway_vectorization().
profile2	A dataframe that generated by function pathway_vectorization().
pathway_info	A list containing pathway information to be compared, which can be generated by the merge_pathway function.

Value

Return a dataframe containing pathway ID and p-value.

Examples

data(example)
significant_pathway=pathway_comparison(Treatment_profile,Model_profile,pathway_info)

github-gs/QPA documentation built on Sept. 11, 2019, 9:46 a.m.