Description Usage Arguments Examples

This function generates data from the BayesDiallel model. It does not currently allow for sex interactions with strain-level effects, as is possible in the proper BayesDiallel package.

1 2 3 4 5 6 7 | ```
## S3 method for class 'diallel'
simulate(M = 8, mu = 10, inbred.mu = -5,
female.mu = -2, add.size, inbred.size, epi.sym.size, epi.asym.size,
maternal.size = 0, add.effect = NULL, inbred.effect = NULL,
epi.sym.effect = NULL, epi.asym.effect = NULL,
maternal.effect = NULL, n.each = 5, num.sim = 1,
strains = LETTERS[1:M])
``` |

`M` |
DEFAULT: 8. The number of strains in the diallel cross. Default of 8 is the number of founders in the Collaborative Cross. |

`mu` |
DEFAULT: 10. The grand mean of the phenotype. |

`inbred.mu` |
DEFAULT: -5. The overall inbred effect. |

`female.mu` |
DEFAULT: -2. The overall female effect (male is reference). |

`add.size` |
The proportion of the variance explained by the additive effects. |

`inbred.size` |
The proportion of the variance explained by the inbred effects. |

`epi.sym.size` |
The proportion of the variance explained by the symmetric epistatic effects. |

`epi.asym.size` |
The proportion of the variance explained by the asymmetric epistatic effects. |

`maternal.size` |
The proportion of the variance explained by the maternal effects. |

`n.each` |
DEFAULT: 5. The number of individuals simulated per cell of the diallel. Total sample size of diallel cross will be n.each * 64 |

`num.sim` |
DEFAULT: 1. The number of diallel cross simulations to perform. |

`strains` |
DEFAULT: c("A", "B", "C", "D", "E", "F", "G", "H"). The strain names used. Defaults to simple letter representation. |

1 |

gkeele/DIDACT documentation built on Dec. 9, 2018, 12:27 a.m.

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