diallel.phenotype.map: Heatmap of mean phenotype for diallel cross.

In gkeele/DIDACT: Diallel Informed Decision theoretic Approach for Crosses Tool (DIDACT)

Description

This function produces a heatmap of the mean phenotypes per diallel cell, providing a visualization of raw diallel data.

Usage

diallel.phenotype.map(mother.str.var, father.str.var, phenotype, data,
  phenotype.title = NULL, do.reorder = TRUE,
  strains.reorder = c("AJ", "B6", "129", "NOD", "NZO", "CAST", "PWK",
  "WSB"), strain.names = c("AJ", "B6", "129", "NOD", "NZO", "CAST",
  "PWK", "WSB"), strain.colors = c("#F0F000", "#808080", "#F08080",
  "#1010F0", "#00A0F0", "#00A000", "#F00000", "#9000E0"), strain.cex = 1)

Arguments

mother.str.var	Name of variable encoding the mother/dam strain identity.
father.str.var	Name of variable encoding the father/sire strain identity.
phenotype	Name of the phenotype variable. A quantitative phenotype is expected.
data	The data.frame that contains the phenotype and parental strain identities.
phenotype.title	DEFAULT: NULL. The title for the phenotype. If NULL, it is left blank.
do.reorder	DEFAULT: TRUE. If TRUE, reorders strains according to strain.reorder argument.
strains.reorder	DEFAULT: c("AJ", "B6", "129", "NOD", "NZO", "CAST", "PWK", "WSB"). By default, reorders strains based on the standard order of the Collaborative Cross strains.
strain.names	DEFAULT: c("AJ", "B6", "129", "NOD", "NZO", "CAST", "PWK", "WSB"). By default, renames strains to the slightly abbreviated Collaborative Cross labels.
strain.colors	DEFAULT: c("#F0F000", "#808080", "#F08080", "#1010F0", "#00A0F0", "#00A000", "#F00000", "#9000E0"). By default, the standard Collaborative Cross colors are specified.
strain.cex	DEFAULT: 1. Specifies the size of strain labels.

Examples

diallel.phenotype.map

gkeele/DIDACT documentation built on Jan. 1, 2020, 2:58 a.m.