Description Usage Arguments Examples
View source: R/plot_functions.R
This function produces a heatmap of the mean phenotypes per diallel cell, providing a visualization of raw diallel data.
1 2 3 4 5 6 | diallel.phenotype.map(mother.str.var, father.str.var, phenotype, data,
phenotype.title = NULL, do.reorder = TRUE,
strains.reorder = c("AJ", "B6", "129", "NOD", "NZO", "CAST", "PWK",
"WSB"), strain.names = c("AJ", "B6", "129", "NOD", "NZO", "CAST",
"PWK", "WSB"), strain.colors = c("#F0F000", "#808080", "#F08080",
"#1010F0", "#00A0F0", "#00A000", "#F00000", "#9000E0"), strain.cex = 1)
|
mother.str.var |
Name of variable encoding the mother/dam strain identity. |
father.str.var |
Name of variable encoding the father/sire strain identity. |
phenotype |
Name of the phenotype variable. A quantitative phenotype is expected. |
data |
The data.frame that contains the phenotype and parental strain identities. |
phenotype.title |
DEFAULT: NULL. The title for the phenotype. If NULL, it is left blank. |
do.reorder |
DEFAULT: TRUE. If TRUE, reorders strains according to strain.reorder argument. |
strains.reorder |
DEFAULT: c("AJ", "B6", "129", "NOD", "NZO", "CAST", "PWK", "WSB"). By default, reorders strains based on the standard order of the Collaborative Cross strains. |
strain.names |
DEFAULT: c("AJ", "B6", "129", "NOD", "NZO", "CAST", "PWK", "WSB"). By default, renames strains to the slightly abbreviated Collaborative Cross labels. |
strain.colors |
DEFAULT: c("#F0F000", "#808080", "#F08080", "#1010F0", "#00A0F0", "#00A000", "#F00000", "#9000E0"). By default, the standard Collaborative Cross colors are specified. |
strain.cex |
DEFAULT: 1. Specifies the size of strain labels. |
1 |
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