API for gkeele/Diploffect.INLA
INLA Implementation of the Diploffect Model
| Global functions | |
|---|---|
| ENV | Source code |
| assert.happy | Source code |
| calculate.diplotype.effects | Source code |
| caught.error | Source code |
| dfapply | Source code |
| elem | Source code |
| external.get.ci.from.inla.marginal | Source code |
| force.logical | Source code |
| formula.as.string | Source code |
| genotype.to.count | Source code |
| genotype.to.factor | Source code |
| genotype.to.hier | Source code |
| get.ci.from.mcmc | Source code |
| get.extra | Source code |
| get.nearest.marker | Source code |
| get.posterior.from.samples | Source code |
| get.straineff.method | Source code |
| happy.check.bp | Source code |
| happy.clear.reserve | Source code |
| happy.get.allele.freq | Source code |
| happy.get.allowed.models | Source code |
| happy.get.bp | Source code |
| happy.get.chromosome | Source code |
| happy.get.chromosome.length | Source code |
| happy.get.design | Source code |
| happy.get.design.old | Source code |
| happy.get.diplotype.tensor | Source code |
| happy.get.first.marker | Source code |
| happy.get.genotype | Source code |
| happy.get.interval.length | Source code |
| happy.get.interval.midpoint | Source code |
| happy.get.interval.over | Source code |
| happy.get.interval.range | Source code |
| happy.get.intervals | Source code |
| happy.get.intervals.in.range | Source code |
| happy.get.last.marker | Source code |
| happy.get.location | Source code |
| happy.get.markers | Source code |
| happy.get.markers.between | Source code |
| happy.get.models | Source code |
| happy.get.next.marker | Source code |
| happy.get.position | Source code |
| happy.get.previous.marker | Source code |
| happy.get.reserve.limit | Source code |
| happy.get.reserved.marker | Source code |
| happy.get.strains | Source code |
| happy.get.subjects | Source code |
| happy.has.chromosomes | Source code |
| happy.has.markers | Source code |
| happy.has.model | Source code |
| happy.has.reserved.marker | Source code |
| happy.has.subjects | Source code |
| happy.init.reserve | Source code |
| happy.is.auto.reserve | Source code |
| happy.list.chromosomes | Source code |
| happy.load.marker | Source code |
| happy.make.colnames | Source code |
| happy.matrixop.diplotypes.to.full | Source code |
| happy.matrixop.full.asymmetric.to.diplotypes | Source code |
| happy.matrixop.full.to.diplotypes | Source code |
| happy.num.strains | Source code |
| happy.reserve.exists | Source code |
| happy.reserve.get | Source code |
| happy.reserve.has | Source code |
| happy.reserve.has.scratch | Source code |
| happy.reserve.marker | Source code |
| happy.reserve.markers | Source code |
| happy.reserve.memory.usage | Source code |
| happy.reserve.put | Source code |
| happy.set.auto.reserve | Source code |
| ifow | Source code |
| igrep | Source code |
| incidence.matrix | Source code Source code |
| interpolate | Source code |
| interpolate.Sys.env | Source code |
| invlogit | Source code |
| is.formula | Source code |
| is.wholenumber | Source code |
| list.subdirs | Source code |
| load.ci.from.mcmc | Source code |
| log.haplotype.prior | Source code |
| logit | Source code |
| make.M | Source code |
| map.eq | Source code |
| object.sizes | Source code |
| plot.ci | Source code |
| plot.comparison.cis | Source code |
| plot.deviation.ci | Man page Source code |
| plot.diallel | Source code |
| plot.diplotype.ci | Man page Source code |
| plot.straineff.ci | Man page Source code |
| plot.varexp.ci | Man page Source code |
| prepare.additive.dominant.ratio.posterior | Source code |
| process.formula | Source code |
| remove.small.probability | Source code |
| rint | Man page Source code |
| run.diploffect.inla | Man page Source code |
| run.diploffect.inla.summary.stats | Man page Source code |
| run.diploffect.inla.through.genomecache | Man page Source code |
| se.mean | Source code |
| shannon.entropy | Source code |
| sic | Source code |
| split.formula | Source code |
| split.pathname | Source code |
| straineff.extra | Source code |
| straineff.get.posterior.matrix | Source code |
| straineff.mapping.matrix | Source code |
| straineff.mapping.matrix.happy | Source code |
| straineff.mapping.pair | Source code |
| straineff.method.factory | Source code |
| straineff.posterior.entropy | Source code |
| straineff.prior.entropy | Source code |
| straineff.prior.sic | Source code |
| straineff.prior.sic.vector | Source code |
| straineff.smooth.probability.matrix | Source code |
| straineff.true.founder.posterior | Source code |
| straineff.true.founder.prior | Source code |
| strcat | Source code |
| string.trim | Source code |
| summarize.beta | Source code |
| summarize.diplotype.effects | Source code |
| summarize.haplotype | Source code |
| summarize.weighted.beta | Source code |
| tr | Source code |
| traces.deviated.effects | Source code |
| traces.diplotype.effects | Source code |
| write.delim | Source code |
