This package contains a number of useful QTL mapping utilities. It supports single locus modeling in terms of haplotype descent and SNPs. These methods make use of a genome cache directory that contains information on haplotype descent for all individuals at all loci in a specific file setup. For haplotypes, both regression-on-probabilities (ROP) and multiple imputations are possible. For SNPs, dosages (imputation from haplotypes - in the human GWAS sense) are used. An invertible relationship matrix can be used to include a random effect. Exact and approximate (estimation of variance components only under the null model) analysis are possible. For haplotype analysis, weights can be included on the error covariance matrix.
Package details |
|
---|---|
Maintainer | |
License | GPL (>= 2) |
Version | 1.1.2 |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.