Files in gkeele/miqtl
Suite of QTL Mapping Functions
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/.Rhistory
R/DiploprobReaderClass.R
R/WVmisc.R
R/allele.plotter.R
R/calc.kinship.from.genomecache.with.DOQTL.R
R/ci_support.R
R/collapse.genomecache.R
R/condition_thru_residuals.R
R/convert.DOQTL.to.HAPPY.R
R/convert.qtl2.to.HAPPY.R
R/fixef.eQTL.scan.R
R/fixef.mediation.scan.R
R/genome_plotter.R
R/get_SIM.R
R/imputed.snp.scan.h2lmm.R
R/instability_scans.R
R/lmmbygls.R
R/lmmbygls.random.R
R/lmmbylmer.R
R/locus_effects_plot.R
R/multi.imput.lmmbygls.R
R/null_pvalue_plot.R
R/prob.heatmap.R
R/read.happy.core.R
R/read.happy.derived.R
R/read.happy.genotype.R
R/read.happy.reserve.R
R/sampling.processes.R
R/scan.EM.R
R/scan.h2lmm.R
R/scan.h2lmm.deBLUP.R
R/snp_plotter.R
R/snp_r2.R
R/snp_thresholds.R
R/support_functions.R
R/support_functions_EM.R
R/support_functions_data.R
R/support_functions_formula.R
README.md
man/allele.plotter.whole.Rd
man/collapse.genomecache.Rd
man/condition.out.locus.for.scan.Rd
man/convert.DOQTL.to.HAPPY.Rd
man/convert.full.DOQTL.array.to.HAPPY.Rd
man/convert.qtl2.to.HAPPY.Rd
man/extract.chr.max.statistics.from.genomewide.Rd
man/extract.mediation.expression.qr.Rd
man/extract.mediation.qr.Rd
man/extract.qr.Rd
man/extract.r2.interval.Rd
man/generate.qr.permutation.index.matrix.Rd
man/generate.sample.outcomes.matrix.Rd
man/generate.simple.sample.outcomes.matrix.Rd
man/genome.plotter.chr.Rd
man/genome.plotter.region.Rd
man/genome.plotter.to.pdf.Rd
man/genome.plotter.whole.Rd
man/get.gev.thresholds.Rd
man/grab.locus.from.scan.Rd
man/imputed.snp.scan.h2lmm.Rd
man/instability.lm.scan.Rd
man/lmmbygls.Rd
man/mediation.scan.qr.Rd
man/pairwise.cor.snp.scan.Rd
man/plot_locus.effect.from.scan.Rd
man/prob.heatmap.Rd
man/rint.Rd
man/run.positional.scans.Rd
man/run.qr.permutation.threshold.mediation.expression.scans.Rd
man/run.qr.permutation.threshold.mediation.scans.Rd
man/run.qr.permutation.threshold.scans.Rd
man/run.simple.permutation.threshold.scans.Rd
man/run.threshold.scans.Rd
man/scan.h2lmm.Rd
man/scan.qr.Rd
man/single.chr.plotter.w.ci.Rd
man/snp.genome.plotter.w.r2.Rd
man/snp.genome.plotter.whole.Rd
