Man pages for gkeele/sparcc
Simulated Power Analysis in the Realized Collaborative Cross
| convert.qtl.effect.to.means | Calculates the QTL effect size in a population of means based... |
| generate.perm.matrix | Generates a matrix of permutation indeces. Can be used across... |
| get.thresholds | Extract GEV thresholds from permutation scans from SPARCC... |
| interpolate.qtl.distance | Interpolates QTL location error for sample populations with... |
| interpolate.qtl.power | Interpolates QTL mapping power for sample populations with... |
| interpolate.table | Convenience function that interpolates QTL mapping power... |
| pull.dist.from.locus | Calculate the distance between the simulated QTL and the... |
| pull.false.positive.prob | Calculate the probability of detecting any false QTL from... |
| pull.power | Calculate the QTL mapping power from SPARCC genome scans... |
| run.perm.scans | Runs permutation scans from a permutation index matrix,... |
| run.sim.scans | Runs the genome scans of the simulated data output by... |
| sim.CC.data | Simulate Collaborative Cross (CC) phenotype data from the... |
| sim.CC.data.K | Simulate Collaborative Cross (CC) phenotype data from the... |
| single.sim.plot | Plots a single simulated scan. Built on... |
