pull.power: Calculate the QTL mapping power from SPARCC genome scans...

In gkeele/sparcc: Simulated Power Analysis in the Realized Collaborative Cross

Description

This function takes output genome scans from run.sim.scans() and calculates the power to map the simulated QTL. A window around the QTL can be specified to allow peaks not immediately at the simulated locus but likely tagging the QTL to also be included.

Usage

## S3 method for class 'power'
pull(sim.scans, thresh, window.mb = 5)

Arguments

sim.scans	Output simulated genome scans from run.sim.scans().
thresh	A list of threshold, calculated from get.gev.thresh(), that correspond to the scans in sim.scans.
window.mb	DEFAULT: 5. Loci upstream and downstream the specified window.mb in Mb will also be checked for statistically significant signals. Sometimes the statistical score will not pass at the simulated QTL, but does at nearby loci.

Examples

pull.power()

gkeele/sparcc documentation built on May 28, 2019, 5:43 a.m.