R/irfparF.R

In glotaran/TIMP: Fitting Separable Nonlinear Models in Spectroscopy and Microscopy

"irfparF" <-
  function(irfpar, lambdac, lambda, i, mudisp = FALSE, parmu = vector(),
           taudisp = FALSE, partau = vector(), dispmufun = "",
           disptaufun = "", doublegaus = FALSE, multiplegaus = FALSE) {
    irfvec <- vector()
    if (mudisp) {
      if (dispmufun == "discrete") {
        irfvec[1] <- parmu[i]
      }
      # if(dispmufun == "logistic")
      #        irfvec[1] <- superLogistic(irfpar[1], parmu, lambda)
      if (dispmufun == "poly") {
        irfvec[1] <- simpPol(irfpar[1], parmu, lambda, lambdac)
      }
    } else {
      irfvec[1] <- irfpar[1]
    }
    if (taudisp) {
      if (disptaufun == "discrete") {
        irfvec[2] <- partau[i]
      } else {
        if (dispmufun == "discrete") {
          irfpar <- append(0, irfpar)
        }
        # if(disptaufun == "logistic")
        # 	  irfvec[2] <- superLogistic(irfpar[1], parmu, lambda)
        if (disptaufun == "poly") {
          irfvec[2] <- simpPol(
            irfpar[2], partau, lambda,
            lambdac
          )
        }
      }
    } else {
      irfvec[2] <- if (dispmufun != "discrete") {
        irfpar[2]
      } else {
        irfpar[1]
      }
    }
    ## assuming no dispersion for 2nd, 3rd, etc gaussians
    if (doublegaus) irfvec <- append(irfvec, irfpar[3:length(irfpar)])
    if (multiplegaus) irfvec <- append(irfvec, irfpar[3:length(irfpar)])
    irfvec
  }