R/linlogplot.R

In glotaran/TIMP: Fitting Separable Nonlinear Models in Spectroscopy and Microscopy

"linlogplot" <- function(x, y, mu, alpha, xlim, ...) {
  maxorigx <- max(x)
  minorigx <- min(x)
  for (i in 1:length(x)) {
    if ((x[i] - mu) / alpha >= 1) {
      x[i] <- alpha + (alpha * log10((x[i] - mu) / alpha))
    } else if ((x[i] - mu) / alpha < -1) {
      x[i] <- -alpha - (alpha * log10((mu - x[i]) / alpha))
    } else {
      x[i] <- x[i] - mu
    }
  }
  for (i in 1:length(xlim)) {
    if ((xlim[i] - mu) / alpha >= 1) {
      xlim[i] <- alpha + (alpha * log10((xlim[i] - mu) / alpha))
    } else if ((xlim[i] - mu) / alpha < -1) {
      xlim[i] <- -alpha - (alpha * log10((mu - xlim[i]) / alpha))
    } else {
      xlim[i] <- xlim[i] - mu
    }
  }

  ticsl <- c(-alpha)
  tics <- c(-alpha)
  cntmin <- -alpha
  while (cntmin > minorigx) {
    cntmin <- cntmin * 10
    ticsl <- append(ticsl, cntmin)
    tics <- append(tics, -alpha - (alpha * log10(-cntmin / alpha)))
  }
  ticsl <- append(sort(ticsl), c(0, alpha))
  tics <- append(sort(tics), c(0, alpha))
  cntmax <- alpha
  while (cntmax < maxorigx) {
    cntmax <- cntmax * 10
    ticsl <- append(ticsl, cntmax)
    tics <- append(tics, alpha + (alpha * log10(cntmax / alpha)))
  }
  plot(x, y, xaxt = "n", xlim = xlim, ...)
  axis(side = 1, at = tics, labels = ticsl)
}