R/weightPsi.R

In glotaran/TIMP: Fitting Separable Nonlinear Models in Spectroscopy and Microscopy

"weightPsi" <-
  function(model) {
    psisim <- model@psi.df
    if (is.na(model@weightM[1, 1])) { # weight not used from previous analysis
      weight <- matrix(1, nrow = model@nt, ncol = model@nl)
    } else {
      weight <- model@weightM
    }
    wt <- model@weightpar
    typ <- model@weightsmooth$funct
    if (length(wt) != 0 && length(wt$poisson) == 0) {
      for (i in 1:length(wt)) {
        if (is.na(wt[[i]][1])) {
          wt[[i]][1] <- model@x[1]
        }
        if (is.na(wt[[i]][2])) {
          wt[[i]][2] <- model@x[model@nt]
        }
        if (is.na(wt[[i]][3])) {
          wt[[i]][3] <- model@x2[1]
        }
        if (is.na(wt[[i]][4])) {
          wt[[i]][4] <- model@x2[model@nl]
        }
        for (j in 1:model@nl) {
          for (k in 1:model@nt) {
            if (((model@x2[j] >= wt[[i]][3]) && (model@x2[j] <=
              wt[[i]][4])) && ((model@x[k] >= wt[[i]][1]) &&
              (model@x[k] <= wt[[i]][2]))) {
              weight[k, j] <- wt[[i]][5] * weight[k, j]
            }
          }
        }
      }
    } else {
      if (wt$poisson) {
        for (j in 1:model@nl) {
          for (k in 1:model@nt) {
            if (psisim[k, j] > 0) {
              weight[k, j] <- 1 / (sqrt(psisim[k, j]))
            }
          }
        }
      }
    }
    psisim <- psisim * weight
    list(psi.weight = psisim, weight = weight)
  }