corr | R Documentation |
Calculating spearman correlation between each OTU and each metabolites.
corr(m, b, method = "spearman", parallel = FALSE, ncore = 4)
m |
mSet class |
b |
bSet class |
method |
character default is spearman |
parallel |
logical |
ncore |
integer number of core,default is 4 |
the correlation data table
library(data.table) path <- system.file('extdata','metabolites_and_genera.rda',package = 'mbOmic') load(path) names(genera)[1] <- 'rn' names(metabolites)[1] <- 'rn' b <- bSet(b = genera) m <- mSet(m = metabolites) res <- corr(m, b, method = 'spearman')
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