estimate_k: estimate_k
In gongcongcong/mbOmic: Integrative analysis of the microbiome and metabolome
estimate_k R Documentation
estimate_k
Description
To estimate the optimal cluster number ,
'estimate_k' takes advantage of two measures,
Calinski-Harabasz (CH) Index and silhouette coefficients.
Usage
estimate_k(b, verK = 2:10)
Arguments
b
bacterial abundance matrix
verK
number vector of cluster
Value
list
Examples
data(iris)
b <- bSet(b = data.table::as.data.table(t(iris[1:6, 1:4])),
Features = letters[1:4],
Samples = LETTERS[1:6])
ret <- estimate_k(b = b, 2:3)
gongcongcong/mbOmic documentation built on July 1, 2023, 1:47 p.m.
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| estimate_k | R Documentation |
estimate_k
Description
To estimate the optimal cluster number , 'estimate_k' takes advantage of two measures, Calinski-Harabasz (CH) Index and silhouette coefficients.
Usage
estimate_k(b, verK = 2:10)
Arguments
b |
bacterial abundance matrix |
verK |
number vector of cluster |
Value
list
Examples
data(iris)
b <- bSet(b = data.table::as.data.table(t(iris[1:6, 1:4])),
Features = letters[1:4],
Samples = LETTERS[1:6])
ret <- estimate_k(b = b, 2:3)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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