chromosome.limit.coords: This function mapps defines mapping limmit regions based on a...

In gonzolgarcia/svpluscnv: Integrative analyses of CNV segmentation and SV variant calls

Description

This function mapps defines mapping limmit regions based on a segmentation file

Usage

chromosome.limit.coords(cnv)

Arguments

cnv	(S4) an object of class svcnvio containing data type 'cnv' validated by validate.cnv

Value

data.table indicating start and end mapped positions of each chromosome

Examples

## validate input data.frame
cnv <- validate.cnv(segdat_lung_ccle)

chr.lim <- chromosome.limit.coords(cnv)

gonzolgarcia/svpluscnv documentation built on March 4, 2020, 10:06 a.m.