shattered.eval: Evaluate shattered regions based on interleaved breaks and...

In gonzolgarcia/svpluscnv: Integrative analyses of CNV segmentation and SV variant calls

Description

Evaluate shattered regions based on interleaved breaks and breakpoint dispersion parameters

Usage

shattered.eval(
  chromo.regs.obj,
  interleaved.cut = 0.5,
  dist.iqm.cut = 1e+05,
  verbose = TRUE
)

Arguments

chromo.regs.obj	(chromo.regs) An object of class chromo.regs
interleaved.cut	(numeric) the percentage of non interleaved structural variant calls
dist.iqm.cut	(numeric) interquantile average of the distance between breakpoints within a shattered region
verbose	(logical)

Value

an instance of the class 'chromo.regs' containing breakpoint mapping onto genes

gonzolgarcia/svpluscnv documentation built on March 4, 2020, 10:06 a.m.