search_candidates: Search Candidate DNB genes

In gpli/DNB: Dynamical Network Biomarkers

Search Candidate DNB genes

Description

Cluster by correlation, caculate DNB scores of all subtrees, and get best DNB score for each time point

Usage

search_candidates(dnb, min_size = 2, max_size = Inf,
  included_genes = NULL, all = F, with_ctrl = T, verbose = T)

Arguments

dnb	a DNB object
min_size	minimum gene number in subtree. Default 2.
max_size	maximum gene number in subtree. Default Inf.
included_genes	genes to be included in subtree. Default NULL.
all	should all \@codeincluded_genes be in subtree. Default False.
with_ctrl	if consider control group. Default T.
verbose	output progress.

Value

a DNB object

gpli/DNB documentation built on Sept. 21, 2022, 10:57 p.m.