search_candidates: Search Candidate DNB genes

Description Usage Arguments Value

View source: R/search_candidates.R

Description

Cluster by correlation, caculate DNB scores of all subtrees, and get best DNB score for each time point

Usage

1
2
search_candidates(dnb, min_size = 2, max_size = Inf,
  included_genes = NULL, all = F, with_ctrl = T, verbose = T)

Arguments

dnb

a DNB object

min_size

minimum gene number in subtree. Default 2.

max_size

maximum gene number in subtree. Default Inf.

included_genes

genes to be included in subtree. Default NULL.

all

should all \@codeincluded_genes be in subtree. Default False.

with_ctrl

if consider control group. Default T.

verbose

output progress.

Value

a DNB object


gpli/DNB documentation built on Jan. 17, 2019, 12:43 a.m.