| AA | A character vector of amino acids. |
| Abbrev | File containing metabolite information. |
| Abbrev_ics | File containing metabolite information. |
| Abbrev_vanq | File containing metabolite information. |
| Adenine | A character vector of adenine-related compounds. |
| Anno | File containing metabolite information. |
| assign_sample_colors | assign_sample_colors |
| bar_plot_update_manual | Functions to assist in the current UCLA Metabolomics... |
| bar_update_manual | Functions to assist in the current UCLA Metabolomics... |
| call_accucor1 | call_accucor1 Calls Accucor Natural Isotope Correction for... |
| call_accucor2 | call_accucor2... |
| check_50 | Functions to assist in the current UCLA Metabolomics... |
| CoAs | A character vector of co-enzyme A-related compounds. |
| CompMZ | A data frame with compound information for 15710 from the... |
| compound.pathway | A data frame of 3443 KEGG metabolites and their association... |
| compounds | A data frame of 18042 KEGG compounds. |
| correct_iso | Functions to assist in the current UCLA Metabolomics... |
| Curr | A character vector of currency metabolites. |
| Cys | A character vector of cysteine metabolism compounds. |
| Cytosine | A character vector of cytosine-related compounds. |
| element_file | File containing element information. |
| FA | A character vector of fatty acid-related compounds. |
| filter_data | Functions to assist in the current UCLA Metabolomics... |
| Fru | A character vector of fructose metabolism compounds. |
| full_medium_plot_func | Functions to assist in the current UCLA Metabolomics... |
| gene.pathway | A data frame of genes associated with 319 KEGG pathways. This... |
| glycolysis | A character vector of glycolysis compounds. |
| Guanine | A character vector of guanine metabolism compounds. |
| Hex | A character vector of hexose metabolism compounds. |
| info_with_subset_blanks | info_with_subset_blanks |
| KEGG.pathway | A data frame with 514 KEGG pathways and their corresponding... |
| make_data_labeled | Functions to assist in the current UCLA Metabolomics... |
| make_heatmap2 | Make heatmap |
| make_istd | Functions to assist in the current UCLA Metabolomics... |
| make_MA_PItbl | Make MetaboAnalyst compatible peak intensity table CSV |
| make_matrix | This function produces a matrix for hierarchical clustering... |
| make_MID2 | This function produces a data frame with mass isotopologue... |
| make_MID_uncorrected | This function produces a data frame with mass isotopologue... |
| make_PCA2_update | Functions to assist in the current UCLA Metabolomics... |
| Maven_MID_plot | Maven_MID_plot |
| maven_processing | Functions to assist in the current UCLA Metabolomics... |
| molecule_C | File containing metabolite information. |
| molecule_CN | File containing metabolite information. |
| molecule_N | File containing metabolite information. |
| Neurotrans | A character vector of neurotransmitter compounds. |
| normal | A character vector of colors used in heatmaps. |
| paths | A list with all information for 319 KEGG pathways. |
| pipe | Pipe operator |
| plot_istd | Functions to assist in the current UCLA Metabolomics... |
| PPP | A character vector of pentose phosphate metabolism compounds. |
| purine | A character vector of purine metabolism compounds. |
| pyrimidine | A character vector of pyrimidine metabolism compounds. |
| QE | A character vector of compounds to be used as MID inputs for... |
| RelAmounts | Functions to assist in the current UCLA Metabolomics... |
| TCA | A character vector of Tricarboxylic acid (TCA) metabolism... |
| Thymine | A character vector of thymine metabolism compounds. |
| update_info | Functions to assist in the current UCLA Metabolomics... |
| update_info_maven | Functions to assist in the current UCLA Metabolomics... |
| Uracil | A character vector of uracil metabolism compounds. |
