full_medium_plot_func: Functions to assist in the current UCLA Metabolomics...
In graeberlab-ucla/MetabR: MetabR: UCLA Metabolomics QC Analysis Pipeline

full_medium_plot_func

R Documentation

Functions to assist in the current UCLA Metabolomics Pipeline.

Description

This package contains functions to assist in the current UCLA Metabolomics Quality Control and Analysis Pipeline.

Usage

full_medium_plot_func(
  metabolites,
  df,
  repeats,
  n,
  type = NULL,
  index = NULL,
  title_type,
  only_M0 = NA,
  mediumtitle = NULL,
  color_lst = NULL
)

Arguments

`metabolites`	list of metabolites used to run experiment
`df`	amounts3 or amounts
`repeats`	Not currently used
`n`	n = num_conditions
`type`	type = "tf" or other
`index`	index from maven_analysis pre-determined groupings
`title_type`	"nonpathway1", "nonpathway2", or "nonpathway3", or something else
`only_M0`	Not currently being used
`mediumtitle`	mediumtitle="Plots-Relative-To-Fresh"
`color_lst`	m_ind<-which(!grepl("unspent\|[Bb]lank\|[Ff]resh\|[Cc]ontrol\|[Mm]edium\|[Mm]edia",unique(amounts$Condition))) amounts3_colors<- colors1[m_ind]