full_medium_plot_func: Functions to assist in the current UCLA Metabolomics...

In graeberlab-ucla/MetabR: MetabR: UCLA Metabolomics QC Analysis Pipeline

Functions to assist in the current UCLA Metabolomics Pipeline.

Description

This package contains functions to assist in the current UCLA Metabolomics Quality Control and Analysis Pipeline.

Usage

full_medium_plot_func(
  metabolites,
  df,
  repeats,
  n,
  type = NULL,
  index = NULL,
  title_type,
  only_M0 = NA,
  mediumtitle = NULL,
  color_lst = NULL
)

Arguments

metabolites	list of metabolites used to run experiment
df	amounts3 or amounts
repeats	Not currently used
n	n = num_conditions
type	type = "tf" or other
index	index from maven_analysis pre-determined groupings
title_type	"nonpathway1", "nonpathway2", or "nonpathway3", or something else
only_M0	Not currently being used
mediumtitle	mediumtitle="Plots-Relative-To-Fresh"
color_lst	m_ind<-which(!grepl("unspent|[Bb]lank|[Ff]resh|[Cc]ontrol|[Mm]edium|[Mm]edia",unique(amounts$Condition))) amounts3_colors<- colors1[m_ind]

Value

a plot of the relative amounts or samples relative to unspent of specific metabolites

graeberlab-ucla/MetabR documentation built on Feb. 5, 2024, 2:06 p.m.