full_medium_plot_func | R Documentation |
This package contains functions to assist in the current UCLA Metabolomics Quality Control and Analysis Pipeline.
full_medium_plot_func(
metabolites,
df,
repeats,
n,
type = NULL,
index = NULL,
title_type,
only_M0 = NA,
mediumtitle = NULL,
color_lst = NULL
)
metabolites |
list of metabolites used to run experiment |
df |
amounts3 or amounts |
repeats |
Not currently used |
n |
n = num_conditions |
type |
type = "tf" or other |
index |
index from maven_analysis pre-determined groupings |
title_type |
"nonpathway1", "nonpathway2", or "nonpathway3", or something else |
only_M0 |
Not currently being used |
mediumtitle |
mediumtitle="Plots-Relative-To-Fresh" |
color_lst |
m_ind<-which(!grepl("unspent|[Bb]lank|[Ff]resh|[Cc]ontrol|[Mm]edium|[Mm]edia",unique(amounts$Condition))) amounts3_colors<- colors1[m_ind] |
a plot of the relative amounts or samples relative to unspent of specific metabolites
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