call_accucor2: call_accucor2...

In graeberlab-ucla/MetabR: MetabR: UCLA Metabolomics QC Analysis Pipeline

call_accucor2 #devtools::install_github("wangyujue23/AccuCor2",INSTALL_opts = "–no-multiarch") Calls Accucor Natural Isotope Correction for DOUBLE labeled sets. Iso column options are: C13N15-x-x, C13D-x-x, C12 PARENT, C13-, N15-, D- Converts mid_output data to format for Accucor2.

Description

call_accucor2 #devtools::install_github("wangyujue23/AccuCor2",INSTALL_opts = "–no-multiarch") Calls Accucor Natural Isotope Correction for DOUBLE labeled sets. Iso column options are: C13N15-x-x, C13D-x-x, C12 PARENT, C13-, N15-, D- Converts mid_output data to format for Accucor2.

Usage

call_accucor2(mid_output, abbrev, output_dir, Title)

Arguments

mid_output	Uncorrected Mid output for DOUBLE labeled set.
abbrev	The downloaded Google sheets: Abbrev_New2. Columns Abb, Neutral.Formula,Compound, and KEGG.ID are used in function.
output_dir	path
Title	Title to use for naming the corrected file

Value

corr3 NIC corrected version. Not yet in the format for "MIDS corrected output"

Examples

temp<-call_accucor2(mid_output, abbrev, output_dir, Title)

graeberlab-ucla/MetabR documentation built on Feb. 5, 2024, 2:06 p.m.