Man pages for graemetlloyd/metatree
Generating Meta-Analytical Phylogenies
| BuildMetatreeReconciliation | Build metatree taxonomic reconcilaiotn |
| CollapseDuplicateTaxonMRP | Collapses an MRP matrix with duplicate taxa |
| EmbiggenMatrix | Embiggen a cladistic matrix |
| GetFilesForClade | Gets file list for given clade |
| GetPseudoIndependentPhyloFiles | Get pseudo-independent cladistic data sets |
| ListPosition2ListCoordinates | Gives the exact position of the kth item in a list |
| Metatree | Builds metatree from source data |
| metatree-package | Generating Meta-Analytical Phylogenies |
| MultiTreeContradiction | Multiple tree contradiction distances |
| MultiTreeDistance | Multiple tree distances |
| PaleobiologyDBDescendantFinder | Palaeobiology Database Descendant Finder |
| PaleobiologyDBOccurrenceQuerier | Palaeobiology Database Occurrence Querier |
| PaleobiologyDBTaxaQuerier | Palaeobiology Database Taxa Querier |
| PaleobiologyDBTreeBuilder | Palaeobiology Database Tree Builder |
| PisaniMRPPrune | Prunes an MRP matrix of any redundant characters |
| ReadMetatreeXML | Reads in a metatree-format XML file |
| SurvivingLineages | Finds unique surviving lineages of an extinction |
| Tree2MRP | Converts tree(s) to an MRP matrix |
| Trees2MPTsAndStrict | Converts TNT tree output to ape format |
| WriteMetatreeXML | Writes out a metatree-format XML file |
