BuildMetatreeReconciliation: Build metatree taxonomic reconcilaiotn
In graemetlloyd/metatree: Generating Meta-Analytical Phylogenies

Description Usage Arguments Details Value Author(s) References Examples

View source: R/BuildMetatreeReconciliation.R

Given a list of one or more names builds metatree taxonomic reconcilaiton line.

1	BuildMetatreeReconciliation(Taxa, SortNames = FALSE)

`Taxa`	A list of taxa exactly as written in the Paleobiology Database, except with underscores within names instead of spaces.
`SortNames`	Logical indicating whether names should also be sorted (TRUE) or not (FALSE; the default).

Really intended as a tool for the author, this helps automate the process of building XML lines for multiple-taxon reconciliations.

Nothing is returned. Instead the requisite line is sent to the screen ready for copy-pasting into an XML file.

Graeme T. Lloyd graemetlloyd@gmail.com

Lloyd, G. T., Bapst, D. W., Friedman, M. and Davis, K. E., 2016. Probabilistic divergence time estimation without branch lengths: dating the origins of dinosaurs, avian flight, and crown birds. Biology Letters, 12, 20160609.

# Generate a set of two example trees:
Taxa <- c("Elephas_maximus", "Loxodonta_africana", "Loxodonta_cyclotis")

# Convert to MRP and show just matrix:
BuildMetatreeReconciliation(Taxa)