Man pages for granar/granar
Generator of Root ANAtomy in R

aerenchymaCreate aerenchyma
aer_in_geom_xmlGet the coordinate of the first cell center
cell_layerPlace one line of cell center Create a list
cell_voroGet the cooridnates for every nodes in the voronoi
clear_nodesCreate node dataframe of null cells
concavetyMerge multiple polygon cells that are adjacent to each other...
create_anatomyGenerate a root cross-section Functions to generate root...
create_cellsCreate cells space Place initial position of the cell center
fuzze_interMerge connected inter-cellular space together
get_root_sectionRead GRANAR file under XML
granar_metadataGet GRANAR metadata out of .xml
layer_infoGet the coordinate of the first cell center
make_it3DMake a 3D root of a few cells
make_pithMake pith inside the stele remove stele cells and place pith...
pack_xylemDo circle packing to add Xylem element in stele
plot_anatomyPlot root anatomy
plot_granar3dMake a 3D plot (rgl) root of a few cells
pv_readyFormat data for paraview visualisation
read_param_xmlRead the parameters for GRANAR
rondy_cortexAdd inter cellular space Re-do the cortex layer and make it...
root_hairCreate root hair from epidermis cells extend some cells...
septaMake Septa in between aerenchyma lacuna
smoothy_cellsSmooth the edge of cells
substr1remove one str
substr1-setremove one str
sum_areaCompute the sum of the cell areas
vascularAdd the vascular element in the stele remove stele cells and...
vertexPrepare cell wall data tydy cells as vertex data
write_anatomy_xmlWrite the root anatomy as an XML file. The structure of the...
write_CT_OBJwrite a .obj from the generated root cross section
granar/granar documentation built on Sept. 13, 2024, 7 a.m.