Man pages for granar/granar
Generator of Root ANAtomy in R
| aerenchyma | Create aerenchyma |
| aer_in_geom_xml | Get the coordinate of the first cell center |
| cell_layer | Place one line of cell center Create a list |
| cell_voro | Get the cooridnates for every nodes in the voronoi |
| clear_nodes | Create node dataframe of null cells |
| concavety | Merge multiple polygon cells that are adjacent to each other... |
| create_anatomy | Generate a root cross-section Functions to generate root... |
| create_cells | Create cells space Place initial position of the cell center |
| fuzze_inter | Merge connected inter-cellular space together |
| get_root_section | Read GRANAR file under XML |
| granar_metadata | Get GRANAR metadata out of .xml |
| layer_info | Get the coordinate of the first cell center |
| make_it3D | Make a 3D root of a few cells |
| make_pith | Make pith inside the stele remove stele cells and place pith... |
| pack_xylem | Do circle packing to add Xylem element in stele |
| plot_anatomy | Plot root anatomy |
| plot_granar3d | Make a 3D plot (rgl) root of a few cells |
| pv_ready | Format data for paraview visualisation |
| read_param_xml | Read the parameters for GRANAR |
| rondy_cortex | Add inter cellular space Re-do the cortex layer and make it... |
| root_hair | Create root hair from epidermis cells extend some cells... |
| septa | Make Septa in between aerenchyma lacuna |
| smoothy_cells | Smooth the edge of cells |
| substr1 | remove one str |
| substr1-set | remove one str |
| sum_area | Compute the sum of the cell areas |
| vascular | Add the vascular element in the stele remove stele cells and... |
| vertex | Prepare cell wall data tydy cells as vertex data |
| write_anatomy_xml | Write the root anatomy as an XML file. The structure of the... |
| write_CT_OBJ | write a .obj from the generated root cross section |
